Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002557.1

Orthogroup ID

OG0019036

Physical Location & Seq

Genomic Coordinates Reverse (-)

54638 .. 55397

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggaaccacaagcccagcaaccaatggagaatggaggaagcaacaaagcagtcgggagtagtgctaacatgcattgcaggcggaacagtaccaggtgggctcctactacagatcagataagaatcctcaaggagatttacgacaagggagttaagtccccaactgtagagcaggttcagatgatcactcttcagctgaaatggtacggagaggttgagagcaagaacgtcttttattggttccagaaccacaaggctcgggagaagcggaagatacccccgaaagccacaggtaaaacacccgggcttgttgatggatccattaatcttaattttgggtcaactagctctactggtgttgatggatccattgatctcaattttgggtcagctagttctactttcatggaacagcgaggagaagatcaccaggacattaaaacccttccactgtttcccatgcacggtgagaacatctttggcaacatgaagactactttcgagggaggtagcggctatagcggtggctctctttcccttgagctcagcctcaactccagagctgctgattcggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

192

Amino Acids

21.05

Weight (kDa)

7.85

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 90	5.7e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019036)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0180191
rosa_multiflora	Rmu_sc0000235.1_g000032 Rmu_sc0001291.1_g000045 Rmu_sc0002451.1_g000034 Rmu_sc0002557.1_g000012
rosa_rugosa	Rorug02G0268300 Rorug03G0290900 Rorug04G0003400.1 Rorug05G0164000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AciI	CCGC	4 cut(s)	82, 268, 513, 522
AclWI	GGATC	4 cut(s)	312, 325, 360, 373
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	91, 206
AfiI	CCNNNNNNNGG	1 cut(s)	464
AjnI	CCWGG	2 cut(s)	92, 429
AluBI	AGCT	5 cut(s)	196, 348, 392, 544, 563
AluI	AGCT	5 cut(s)	196, 348, 392, 544, 563
Alw21I	GWGCWC	1 cut(s)	546
AlwI	GGATC	4 cut(s)	312, 325, 360, 373
Ama87I	CYCGRG	2 cut(s)	258, 302
ApeKI	GCWGC	1 cut(s)	563
AseI	ATTAAT	1 cut(s)	324
AsuC2I	CCSGG	2 cut(s)	303, 304
AsuHPI	GGTGA	2 cut(s)	419, 479
AvaI	CYCGRG	2 cut(s)	258, 302
BamHI	GGATCC	2 cut(s)	317, 365
BanII	GRGCYC	2 cut(s)	103, 546
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	308, 356
BciT130I	CCWGG	2 cut(s)	94, 431
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	2 cut(s)	303, 304
BfaI	CTAG	2 cut(s)	345, 393
BfmI	CTRYAG	3 cut(s)	108, 165, 517
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	514, 564
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	2 cut(s)	515, 565
Bme1390I	CCNGG	4 cut(s)	94, 303, 304, 431
BmeT110I	CYCGRG	2 cut(s)	258, 302
BmiI	GGNNCC	5 cut(s)	6, 102, 242, 319, 367
BmrFI	CCNGG	4 cut(s)	94, 303, 304, 431
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	541
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	113, 560
BpuMI	CCSGG	2 cut(s)	303, 304
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	94, 431
BseDI	CCNNGG	1 cut(s)	302
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	559
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	2 cut(s)	258, 302
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	142
BsoBI	CYCGRG	2 cut(s)	258, 302
Bsp1286I	GDGCHC	2 cut(s)	103, 546
Bsp143I	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
Bsp1720I	GCTNAGC	1 cut(s)	545
BspACI	CCGC	4 cut(s)	82, 268, 513, 522
BspCNI	CTCAG	1 cut(s)	558
BspLI	GGNNCC	5 cut(s)	6, 102, 242, 319, 367
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	4 cut(s)	312, 325, 360, 373
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
Bst2UI	CCWGG	2 cut(s)	94, 431
Bst4CI	ACNGT	4 cut(s)	89, 166, 453, 467
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	545, 576
BstKTI	GATC	6 cut(s)	115, 186, 320, 368, 376, 427
BstMBI	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 519, 572
BstNI	CCWGG	2 cut(s)	94, 431
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	4 cut(s)	92, 301, 302, 429
BstSFI	CTRYAG	3 cut(s)	108, 165, 517
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	317, 365
BstYI	RGATCY	2 cut(s)	317, 365
BtsIMutI	CAGTG	1 cut(s)	449
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	80
Cfr9I	CCCGGG	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 205
CviAII	CATG	4 cut(s)	70, 406, 460, 487
CviQI	GTAC	2 cut(s)	90, 205
DdeI	CTNAG	2 cut(s)	545, 576
DpnI	GATC	6 cut(s)	114, 185, 319, 367, 375, 426
DpnII	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	544
Eco24I	GRGCYC	2 cut(s)	103, 546
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	2 cut(s)	258, 302
EcoICRI	GAGCTC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	92, 429
EcoT22I	ATGCAT	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	103, 546
FaeI	CATG	4 cut(s)	73, 409, 463, 490
FaiI	YATR	5 cut(s)	71, 407, 461, 488, 519
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	4 cut(s)	69, 405, 459, 486
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	514, 564
FriOI	GRGCYC	2 cut(s)	103, 546
Fsp4HI	GCNGC	2 cut(s)	514, 564
FspBI	CTAG	2 cut(s)	345, 393
GluI	GCNGC	2 cut(s)	514, 564
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	541
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	4 cut(s)	73, 409, 463, 490
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	2 cut(s)	123, 569
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	419, 479
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	2 cut(s)	117, 180
Hpy188III	TCNNGA	4 cut(s)	55, 244, 260, 558
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	4 cut(s)	89, 166, 453, 467
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	73, 78, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 519, 572
HpyF3I	CTNAG	2 cut(s)	545, 576
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	73, 409, 463, 490
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	550
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	345, 393
MaeII	ACGT	1 cut(s)	228
MalI	GATC	6 cut(s)	114, 185, 319, 367, 375, 426
MboI	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
MboII	GAAGA	4 cut(s)	182, 283, 434, 502
MflI	RGATCY	2 cut(s)	317, 365
MhlI	GDGCHC	2 cut(s)	103, 546
MluCI	AATT	2 cut(s)	331, 379
MnlI	CCTC	7 cut(s)	29, 137, 205, 410, 496, 500, 560
Mph1103I	ATGCAT	1 cut(s)	75
MseI	TTAA	4 cut(s)	153, 324, 330, 438
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	4 cut(s)	94, 303, 304, 431
MvaI	CCWGG	2 cut(s)	94, 431
MwoI	GCNNNNNNNGC	3 cut(s)	79, 519, 572
NciI	CCSGG	2 cut(s)	303, 304
NdeII	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
NlaIII	CATG	4 cut(s)	73, 409, 463, 490
NlaIV	GGNNCC	5 cut(s)	6, 102, 242, 319, 367
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	123, 569
PkrI	GCNGC	2 cut(s)	515, 565
PshBI	ATTAAT	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	92, 429
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	92, 429
PspN4I	GGNNCC	5 cut(s)	6, 102, 242, 319, 367
PsrI	GAACNNNNNNTAC	2 cut(s)	159, 191
PsuI	RGATCY	2 cut(s)	317, 365
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	91, 206
RsaNI	GTAC	2 cut(s)	90, 205
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	153, 324, 330, 438
SatI	GCNGC	2 cut(s)	514, 564
Sau3AI	GATC	6 cut(s)	112, 183, 317, 365, 373, 424
ScrFI	CCNGG	4 cut(s)	94, 303, 304, 431
SduI	GDGCHC	2 cut(s)	103, 546
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	3 cut(s)	108, 165, 517
SmaI	CCCGGG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	128, 539
SmoI	CTYRAG	2 cut(s)	128, 539
Sse9I	AATT	2 cut(s)	331, 379
SsiI	CCGC	4 cut(s)	82, 268, 513, 522
SspMI	CTAG	2 cut(s)	345, 393
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	4 cut(s)	92, 301, 302, 429
TaaI	ACNGT	4 cut(s)	89, 166, 453, 467
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	501
TasI	AATT	2 cut(s)	331, 379
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	123, 569
Tru1I	TTAA	4 cut(s)	153, 324, 330, 438
Tru9I	TTAA	4 cut(s)	153, 324, 330, 438
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	394, 503
TspGWI	ACGGA	1 cut(s)	222
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	324
XceI	RCATGY	1 cut(s)	73
XmaI	CCCGGG	1 cut(s)	302
XspI	CTAG	2 cut(s)	345, 393
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.