Rmu_sc0002578.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002578.1
OG0031216
Physical Location & Seq
Reverse (-)
36278 .. 36625
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002578.1_g000005.1.cds

Sequence Viewer

Length: 348 bp
atgagtaacctgaacaaattgaactttgctccattaggaacaactggctctgaatatcacaggtggattcgtgatgtccgccagcatctcaaggctgatggaatcctagatacgattctcgagcctagccaggacgtgctaactgttgagcaagctcaagcattggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcactcatcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccccaaaaggctgtgggtctcactcgaagaaagatttggcaacgtccatgactccctgcttcctgacctagaagtgagatggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

115

Amino Acids

13.25

Weight (kDa)

5.11

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031216)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8368419.1_g000002 Rmu_sc0002578.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 1 cut(s) 22
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 92, 215, 333
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 3 cut(s) 107, 126, 329
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 74, 141
BsaI GGTCTC 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 49, 235
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 49, 235
BseXI GCAGC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 119
BspACI CCGC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 283
BsrI ACTGG 2 cut(s) 49, 235
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 283
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 264
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 83, 153
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 308
CviJI RGCY 8 cut(s) 48, 95, 124, 129, 155, 182, 206, 271
CviKI_1 RGCY 8 cut(s) 48, 95, 124, 129, 155, 182, 206, 271
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 311
FaiI YATR 4 cut(s) 219, 221, 248, 309
FatI CATG 1 cut(s) 307
FauNDI CATATG 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 3 cut(s) 107, 126, 329
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 218
Hin1II CATG 1 cut(s) 311
HinfI GANTC 5 cut(s) 67, 102, 115, 227, 311
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 71, 119, 323
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 135, 303
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 135, 303
Hsp92II CATG 1 cut(s) 311
LmnI GCTCC 2 cut(s) 34, 237
LpnPI CCDG 9 cut(s) 23, 30, 46, 95, 116, 143, 248, 329, 336
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 107, 126, 329
MaeII ACGT 2 cut(s) 135, 303
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 3 cut(s) 266, 269, 299
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 1 cut(s) 181
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
NdeI CATATG 1 cut(s) 219
NlaIII CATG 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 4 cut(s) 67, 102, 115, 227
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 222
SatI GCNGC 1 cut(s) 180
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 12, 65, 138, 157, 306, 330
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SsiI CCGC 1 cut(s) 79
SspMI CTAG 3 cut(s) 107, 126, 329
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 2 cut(s) 138, 306
TaqI TCGA 2 cut(s) 120, 285
TasI AATT 1 cut(s) 17
TfiI GAWTC 4 cut(s) 67, 102, 115, 227
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 263, 267
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 3 cut(s) 107, 126, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.