Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002610.1

Orthogroup ID

OG0021657

Physical Location & Seq

Genomic Coordinates Forward (+)

46467 .. 47975

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgctagagctcaaatcttctcgctcttgttcttggctatttcggagagagaccaagggaaggagcaaaaaatttccaattcccgttggattccagaaccggagagcggcggcggctcgattccagcgaatgtgctttgctgcaaccgtgatattcggcgcatgtgcttctgattcgtcgccgattgctgatcccgacttgtggttgcatcgactcttgtgtgaaatcttcatggttttttgtcattttgttggagtaggagtgaattgtaaggttatctcaatgtctaagatctcacaccaatcagtggctacacctactagcttggcctcggtgtccactattccggcgtgcaaggtcaatcagttggttcaggttgcacagaagtgccagactatgattgctgaaagtggatctgatggggtttctcagcaggatctacaagcaaatagtaatttggttctaacagctaggtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

159

Amino Acids

17.46

Weight (kDa)

9.5

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021657)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002610.1_g000008
rosa_rugosa	Rorug01G0224500 Rorug05G0517400
rosa_samantha	Rh5BG276100
rosa_wichuraiana	Rw7G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	3 cut(s)	107, 110, 113
AclWI	GGATC	3 cut(s)	185, 421, 444
AcsI	RAATTY	1 cut(s)	71
AfiI	CCNNNNNNNGG	4 cut(s)	60, 106, 201, 307
AleI	CACNNNNGTG	1 cut(s)	385
AluBI	AGCT	3 cut(s)	10, 324, 470
AluI	AGCT	3 cut(s)	10, 324, 470
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	3 cut(s)	185, 421, 444
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	3 cut(s)	5, 321, 471
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	4 cut(s)	108, 111, 114, 141
BlsI	GCNGC	4 cut(s)	109, 112, 115, 142
BmsI	GCATC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	54, 330
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 106, 201, 307
BseDI	CCNNGG	2 cut(s)	54, 330
BseLI	CCNNNNNNNGG	4 cut(s)	60, 106, 201, 307
BseMII	CTCAG	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	100, 347
BslI	CCNNNNNNNGG	4 cut(s)	60, 106, 201, 307
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	190, 291, 413, 436
BspACI	CCGC	3 cut(s)	107, 110, 113
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	442
BspPI	GGATC	3 cut(s)	185, 421, 444
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	54, 330
BssMI	GATC	4 cut(s)	190, 291, 413, 436
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	288, 429
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	193, 294, 416, 439
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	4 cut(s)	190, 291, 413, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	3 cut(s)	291, 413, 436
BstYI	RGATCY	3 cut(s)	291, 413, 436
BsuRI	GGCC	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	1 cut(s)	161
CviAII	CATG	2 cut(s)	162, 232
CviJI	RGCY	7 cut(s)	10, 37, 116, 311, 324, 329, 470
CviKI_1	RGCY	7 cut(s)	10, 37, 116, 311, 324, 329, 470
DdeI	CTNAG	2 cut(s)	288, 429
DpnI	GATC	4 cut(s)	192, 293, 415, 438
DpnII	GATC	4 cut(s)	190, 291, 413, 436
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	165, 235
FaiI	YATR	3 cut(s)	163, 233, 398
FatI	CATG	2 cut(s)	161, 231
Fnu4HI	GCNGC	4 cut(s)	108, 111, 114, 141
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	4 cut(s)	108, 111, 114, 141
FspBI	CTAG	3 cut(s)	5, 321, 471
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	108, 111, 114, 141
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	2 cut(s)	100, 347
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	165, 235
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	4 cut(s)	90, 120, 173, 213
HpaII	CCGG	2 cut(s)	100, 347
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	3 cut(s)	45, 172, 418
Hpy188III	TCNNGA	2 cut(s)	94, 194
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	143, 208, 354, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	288, 429
Hsp92II	CATG	2 cut(s)	165, 235
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	190, 291, 413, 436
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	7 cut(s)	107, 113, 137, 359, 360, 404, 419
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	5, 321, 471
MalI	GATC	4 cut(s)	192, 293, 415, 438
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	4 cut(s)	190, 291, 413, 436
MboII	GAAGA	2 cut(s)	9, 220
MflI	RGATCY	3 cut(s)	291, 413, 436
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	4 cut(s)	71, 78, 265, 454
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	67, 232
MnlI	CCTC	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	2 cut(s)	100, 347
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	4 cut(s)	190, 291, 413, 436
NlaIII	CATG	2 cut(s)	165, 235
NspI	RCATGY	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	90, 120, 173
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	109, 112, 115, 142
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	12
PsuI	RGATCY	3 cut(s)	291, 413, 436
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	12
SatI	GCNGC	4 cut(s)	108, 111, 114, 141
Sau3AI	GATC	4 cut(s)	190, 291, 413, 436
SchI	GAGTC	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	8 cut(s)	12, 276, 319, 326, 360, 378, 472, 476
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	385
Sse9I	AATT	4 cut(s)	71, 78, 265, 454
SsiI	CCGC	3 cut(s)	107, 110, 113
SspMI	CTAG	3 cut(s)	5, 321, 471
SstI	GAGCTC	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	118, 211
TasI	AATT	4 cut(s)	71, 78, 265, 454
TauI	GCSGC	3 cut(s)	110, 113, 116
TfiI	GAWTC	3 cut(s)	90, 120, 173
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	3 cut(s)	5, 321, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.