Rorug05G0517400

Iron-sulfur protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0021657
Physical Location & Seq
Forward (+)
70178611 .. 70180358
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0517400.1

Sequence Viewer

Length: 1371 bp
ATGGATTCCGTCACCATAGGACAACCAACCGGCGTCTGCCACATAGTAGCCATGCCCTATCCCGGCCGGGGTCACATAAACCCTATGATGAACCTCTGCAACTTGCTAGTTTCCCAAAAGAGTGATATTCTAATAACCTTCGTCCTCACAGAAGAGTGGCTCGGCTTAATTGGGTCTGAAGACAAGCCGGACAACATTCGCTTTGCCACAATCCCTAATGTGGTCCCATCGGAGAAGGAACGTGCCGCCGATATGGTTGCGTTCTTTGAAGCCGTCATGACCAAAATGGAAGTTCCGTTTGAGCAACTCCTGGAGGTTCTCGAGCCACCACCTAGTGCCATTGTGGCTGACACTTTCCTGCCTTGGGCAGTCGCCGTCGGCAACCGGAGGAACATTTCTTCGGCGTCGTTTTGGCCAATGACAGGGTCCAATTTCTCCGTGTTCCAGCATTTTCATCTCTTCCAGCAAAATGGACACTTCCCAATTGATTTGTTAGAGAAGGGCAATGAACGTGTTGATTACATCCCAGGAGTTTCTTCCATACGGTTAGCGGACACTACTAATTTCATTGATGGAAGCCAATCAAAAATTCTAGACAATATAATCAAGGCTTTTTCTTGGGTGCCCAAAGCACAATATCTCTTTGTCACCTCTATCTATGAGCTTGAAACCCAAGTGATTGATGCTATAAGATCAGAACTCTCACTACCAGCTTACACAATAGGCCCATTACTACCTTCCTTCAAAGCTATCAGTCCCACTGGTACTAACCATCTACAATGGTTGGATTCTCAACCTTGTAGCTCTGTTTTATATATCTCTATGGGAAGCTTTCTTTCAGTTTCAAGTGCCCAAATGGATGAGATCGCAGTTGGTTTGCGAAAGAGTGGTGTTCGATTCTTTTGGGTTGCTCGCACTGAAACGAATAGGTTACAAGAGGTTTGTGGTGATATGGGGTTAGTTGTTCCCTGGTGTGACCAGTTTAGAGTGTTGTGCCATTCTTCTGTTGGTGGGTATTGGTCACATTGTGGATGGAACTCAGTTAGAGAAGGTGTTTTTGGAGGTGTTCCTTTTCTTACCTTTCCCATAACTTTCGATCAAGGTACAAATAGTAAGGTGGTTGTGGAGGATTGGAAAATTGGGTGGAGGGTGAAGAGTACTGAGGCGAAAATCGACCATTTGGTGACAAGTGAGGAAATTGCAGTGTTAGTGAAAAAATTTATGGATTTGGAGGATGATGAAGGGAAAGAATTGAGAAGGAGAACAAGTGAACTCCAACAGATATGGAAAGGTGCCATTGCAGAAGGCGGTTCAACTAAAACTGACATCAATGCGTTCATTAGAGACATTTCACAGAGCCTTGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ParA

Protein Analysis

456

Amino Acids

50.81

Weight (kDa)

5.11

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 254 - 379 1.2e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021657)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002610.1_g000008
rosa_rugosa Rorug01G0224500 Rorug05G0517400
rosa_samantha Rh5BG276100
rosa_wichuraiana Rw7G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 622, 1292
AciI CCGC 3 cut(s) 246, 551, 1308
AcoI YGGCCR 2 cut(s) 64, 413
AcsI RAATTY 2 cut(s) 588, 1217
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 2 cut(s) 33, 404
AdeI CACNNNGTG 2 cut(s) 335, 1028
AfaI GTAC 3 cut(s) 766, 1105, 1159
AfiI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 5 cut(s) 269, 668, 745, 846, 1314
AjnI CCWGG 3 cut(s) 309, 526, 968
AjuI GAANNNNNNNTTGG 4 cut(s) 573, 605, 1041, 1073
AluBI AGCT 5 cut(s) 664, 713, 749, 804, 831
AluI AGCT 5 cut(s) 664, 713, 749, 804, 831
Alw26I GTCTC 1 cut(s) 1338
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 64, 413, 724
ApoI RAATTY 2 cut(s) 588, 1217
AspS9I GGNCC 3 cut(s) 223, 426, 725
AsuC2I CCSGG 2 cut(s) 63, 68
AsuHPI GGTGA 5 cut(s) 4, 640, 959, 1162, 1195
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 223, 426
BaeGI GKGCMC 2 cut(s) 627, 853
BalI TGGCCA 1 cut(s) 415
BanI GGYRCC 2 cut(s) 622, 1292
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 5 cut(s) 235, 566, 780, 1026, 1358
BceAI ACGGC 2 cut(s) 257, 359
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 3 cut(s) 311, 528, 970
BcnI CCSGG 2 cut(s) 63, 68
BcoDI GTCTC 1 cut(s) 1338
BfaI CTAG 3 cut(s) 107, 333, 593
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 5 cut(s) 63, 68, 311, 528, 970
Bme18I GGWCC 2 cut(s) 223, 426
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 3 cut(s) 223, 426, 725
BmiI GGNNCC 4 cut(s) 225, 427, 624, 1294
BmrFI CCNGG 5 cut(s) 63, 68, 311, 528, 970
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 63, 68
BsaHI GRCGYC 2 cut(s) 33, 404
BsaJI CCNNGG 4 cut(s) 67, 362, 526, 968
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 1252, 1282
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 766, 979
Bse3DI GCAATG 2 cut(s) 511, 1296
BseBI CCWGG 3 cut(s) 311, 528, 970
BseDI CCNNGG 4 cut(s) 67, 362, 526, 968
BseGI GGATG 4 cut(s) 522, 865, 1037, 1240
BseLI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
BseMI GCAATG 2 cut(s) 511, 1296
BseMII CTCAG 2 cut(s) 1053, 1152
BseNI ACTGG 2 cut(s) 766, 979
BseSI GKGCMC 2 cut(s) 627, 853
BseX3I CGGCCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 66, 415, 726
BshNI GGYRCC 2 cut(s) 622, 1292
BsiEI CGRYCG 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 5 cut(s) 30, 63, 67, 188, 385
BslFI GGGAC 2 cut(s) 209, 741
BslI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
BsmAI GTCTC 1 cut(s) 1338
BsmFI GGGAC 2 cut(s) 209, 741
BsnI GGCC 3 cut(s) 66, 415, 726
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 627, 853
Bsp143I GATC 3 cut(s) 692, 864, 1096
BspACI CCGC 3 cut(s) 246, 551, 1308
BspANI GGCC 3 cut(s) 66, 415, 726
BspCNI CTCAG 2 cut(s) 1052, 1153
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 4 cut(s) 225, 427, 624, 1294
BspT107I GGYRCC 2 cut(s) 622, 1292
BsrDI GCAATG 2 cut(s) 511, 1296
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 766, 979
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 67, 362, 526, 968
BssMI GATC 3 cut(s) 692, 864, 1096
BssNI GRCGYC 2 cut(s) 33, 404
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 3 cut(s) 311, 528, 970
Bst4CI ACNGT 1 cut(s) 546
Bst6I CTCTTC 3 cut(s) 147, 464, 1148
BstACI GRCGYC 2 cut(s) 33, 404
BstC8I GCNNGC 1 cut(s) 913
BstDEI CTNAG 2 cut(s) 1039, 1161
BstF5I GGATG 4 cut(s) 522, 865, 1037, 1240
BstKTI GATC 3 cut(s) 695, 867, 1099
BstMAI GTCTC 1 cut(s) 1338
BstMBI GATC 3 cut(s) 692, 864, 1096
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 3 cut(s) 311, 528, 970
BstSCI CCNGG 5 cut(s) 61, 66, 309, 526, 968
BstSLI GKGCMC 2 cut(s) 627, 853
BstV2I GAAGAC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 470
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 66, 415, 726
BtsCI GGATG 4 cut(s) 522, 865, 1037, 1240
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 3 cut(s) 759, 915, 1209
Cac8I GCNNGC 1 cut(s) 913
CciI TCATGA 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 223, 426, 725
CseI GACGC 2 cut(s) 22, 393
Csp6I GTAC 3 cut(s) 765, 1104, 1158
CviAII CATG 2 cut(s) 52, 277
CviQI GTAC 3 cut(s) 765, 1104, 1158
DdeI CTNAG 2 cut(s) 1039, 1161
DpnI GATC 3 cut(s) 694, 866, 1098
DpnII GATC 3 cut(s) 692, 864, 1096
DraIII CACNNNGTG 2 cut(s) 335, 1028
EaeI YGGCCR 2 cut(s) 64, 413
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 3 cut(s) 147, 464, 1148
EarI CTCTTC 3 cut(s) 147, 464, 1148
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 223, 426
Eco52I CGGCCG 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 3 cut(s) 309, 526, 968
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 55, 280
FaqI GGGAC 2 cut(s) 209, 741
FatI CATG 2 cut(s) 51, 276
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 4 cut(s) 509, 872, 1044, 1247
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 3 cut(s) 107, 333, 593
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 3 cut(s) 66, 415, 726
HapII CCGG 5 cut(s) 30, 63, 67, 188, 385
HgaI GACGC 2 cut(s) 22, 393
Hin1I GRCGYC 2 cut(s) 33, 404
Hin1II CATG 2 cut(s) 55, 280
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 3 cut(s) 5, 788, 897
HpaII CCGG 5 cut(s) 30, 63, 67, 188, 385
HphI GGTGA 5 cut(s) 4, 640, 959, 1162, 1195
Hpy166II GTNNAC 1 cut(s) 1271
Hpy188I TCNGA 3 cut(s) 178, 232, 697
Hpy188III TCNNGA 3 cut(s) 277, 320, 593
Hpy8I GTNNAC 1 cut(s) 1271
Hpy99I CGWCG 2 cut(s) 380, 409
HpyAV CCTTC 9 cut(s) 148, 229, 493, 747, 751, 1043, 1235, 1251, 1298
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4IV ACGT 2 cut(s) 241, 511
HpyCH4V TGCA 3 cut(s) 99, 1202, 1301
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 1039, 1161
HpySE526I ACGT 2 cut(s) 241, 511
Hsp92I GRCGYC 2 cut(s) 33, 404
Hsp92II CATG 2 cut(s) 55, 280
Kzo9I GATC 3 cut(s) 692, 864, 1096
LweI GCATC 1 cut(s) 673
MaeI CTAG 3 cut(s) 107, 333, 593
MaeII ACGT 2 cut(s) 241, 511
MaeIII GTNAC 7 cut(s) 10, 71, 646, 930, 974, 1020, 1183
MalI GATC 3 cut(s) 694, 866, 1098
MboI GATC 3 cut(s) 692, 864, 1096
MboII GAAGA 7 cut(s) 164, 191, 390, 451, 528, 993, 1165
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 627, 853
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 9 cut(s) 168, 430, 483, 562, 588, 1137, 1197, 1217, 1250
MluNI TGGCCA 1 cut(s) 415
MmeI TCCRAC 2 cut(s) 765, 1300
Mox20I TGGCCA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 415
MseI TTAA 2 cut(s) 167, 1369
Msp20I TGGCCA 1 cut(s) 415
MspI CCGG 5 cut(s) 30, 63, 67, 188, 385
MspR9I CCNGG 5 cut(s) 63, 68, 311, 528, 970
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 3 cut(s) 311, 528, 970
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 2 cut(s) 63, 68
NdeII GATC 3 cut(s) 692, 864, 1096
NlaIII CATG 2 cut(s) 55, 280
NlaIV GGNNCC 4 cut(s) 225, 427, 624, 1294
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 6 cut(s) 10, 71, 646, 974, 1020, 1183
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 3 cut(s) 5, 788, 897
PflFI GACNNNGTC 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 309, 526, 968
PspGI CCWGG 3 cut(s) 309, 526, 968
PspN4I GGNNCC 4 cut(s) 225, 427, 624, 1294
PspPI GGNCC 3 cut(s) 223, 426, 725
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 3 cut(s) 766, 1105, 1159
RsaNI GTAC 3 cut(s) 765, 1104, 1158
SaqAI TTAA 2 cut(s) 167, 1369
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 692, 864, 1096
Sau96I GGNCC 3 cut(s) 223, 426, 725
ScaI AGTACT 1 cut(s) 1159
ScrFI CCNGG 5 cut(s) 63, 68, 311, 528, 970
SduI GDGCHC 2 cut(s) 627, 853
SfaNI GCATC 1 cut(s) 673
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 223, 426
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 9 cut(s) 168, 430, 483, 562, 588, 1137, 1197, 1217, 1250
SsiI CCGC 3 cut(s) 246, 551, 1308
SspMI CTAG 3 cut(s) 107, 333, 593
StyD4I CCNGG 5 cut(s) 61, 66, 309, 526, 968
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 546
TaiI ACGT 2 cut(s) 244, 514
TaqI TCGA 4 cut(s) 321, 895, 1095, 1173
TasI AATT 9 cut(s) 168, 430, 483, 562, 588, 1137, 1197, 1217, 1250
TatI WGTACW 1 cut(s) 1157
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 3 cut(s) 5, 788, 897
Tru1I TTAA 2 cut(s) 167, 1369
Tru9I TTAA 2 cut(s) 167, 1369
TscAI CASTG 3 cut(s) 766, 922, 1209
TseFI GTSAC 6 cut(s) 10, 71, 646, 974, 1020, 1183
Tsp45I GTSAC 6 cut(s) 10, 71, 646, 974, 1020, 1183
TspDTI ATGAA 6 cut(s) 104, 443, 522, 556, 1254, 1327
TspGWI ACGGA 2 cut(s) 285, 427
TspRI CASTG 3 cut(s) 766, 922, 1209
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 223, 426
XapI RAATTY 2 cut(s) 588, 1217
XbaI TCTAGA 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 3 cut(s) 107, 333, 593
ZrmI AGTACT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.