Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0021657

Physical Location & Seq

Genomic Coordinates Reverse (-)

34838622 .. 34840673

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG276100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCTAAGATCTCACACCAATCAGTGGCTACACCTACTGGCTTGACCTCGGTGTCCACTATTCCGACGTGCAAGTTGGTTCAGGTTGCACAGAAGTGCCAGACTACTATTGCTAAAAGTGGATCTGATGGGGTTTCTCAGCAGGATCTACAAGCAAATAGTAATTTGGTTCTGACAGCTAGGCGCGCGGTGTTTGCAGATATCAAAGGTTGTGAACAGCATGAAAGATTTGATCGAATTCTGCCAGGAAAACAAAGTTGGCCCAGTTGGTTTATCCTCGACATGCGAATGCAACTAAGCTTCAGATGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0047484 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0080134 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901000 GO:1901001 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

9.56

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021657)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002610.1_g000008
rosa_rugosa	Rorug01G0224500 Rorug05G0517400
rosa_samantha	Rh5BG276100
rosa_wichuraiana	Rw7G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccII	CGCG	2 cut(s)	186, 188
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	130, 153
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AleI	CACNNNNGTG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	179, 300
AluI	AGCT	2 cut(s)	179, 300
AlwI	GGATC	2 cut(s)	130, 153
AoxI	GGCC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	186, 188
AspS9I	GGNCC	1 cut(s)	261
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	180
BglII	AGATCT	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	43, 264
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	43, 264
BsePI	GCGCGC	1 cut(s)	184
Bsh1236I	CGCG	2 cut(s)	186, 188
BshFI	GGCC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	9, 122, 145, 232
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	186, 188
BspPI	GGATC	2 cut(s)	130, 153
BsrI	ACTGG	2 cut(s)	43, 264
BssECI	CCNNGG	1 cut(s)	48
BssHII	GCGCGC	1 cut(s)	184
BssMI	GATC	4 cut(s)	9, 122, 145, 232
Bst2UI	CCWGG	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	6, 138, 296
BstFNI	CGCG	2 cut(s)	186, 188
BstHHI	GCGC	2 cut(s)	186, 188
BstKTI	GATC	4 cut(s)	12, 125, 148, 235
BstMBI	GATC	4 cut(s)	9, 122, 145, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 194, 306
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	244
BstUI	CGCG	2 cut(s)	186, 188
BstX2I	RGATCY	3 cut(s)	9, 122, 145
BstYI	RGATCY	3 cut(s)	9, 122, 145
BsuRI	GGCC	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	186, 188
Cfr13I	GGNCC	1 cut(s)	261
CviAII	CATG	2 cut(s)	221, 283
CviJI	RGCY	5 cut(s)	29, 42, 179, 262, 300
CviKI_1	RGCY	5 cut(s)	29, 42, 179, 262, 300
DdeI	CTNAG	3 cut(s)	6, 138, 296
DpnI	GATC	4 cut(s)	11, 124, 147, 234
DpnII	GATC	4 cut(s)	9, 122, 145, 232
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	202
FaeI	CATG	2 cut(s)	224, 286
FaiI	YATR	2 cut(s)	222, 284
FatI	CATG	2 cut(s)	220, 282
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	2 cut(s)	185, 187
HaeIII	GGCC	1 cut(s)	262
HhaI	GCGC	2 cut(s)	186, 188
Hin1II	CATG	2 cut(s)	224, 286
Hin6I	GCGC	2 cut(s)	184, 186
HinP1I	GCGC	2 cut(s)	184, 186
HindIII	AAGCTT	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	57, 215
Hpy188I	TCNGA	4 cut(s)	66, 127, 174, 305
Hpy8I	GTNNAC	2 cut(s)	57, 215
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	72, 89, 197, 292, 309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 194, 306
HpyF3I	CTNAG	3 cut(s)	6, 138, 296
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	224, 286
HspAI	GCGC	2 cut(s)	184, 186
Kzo9I	GATC	4 cut(s)	9, 122, 145, 232
LpnPI	CCDG	7 cut(s)	24, 68, 113, 128, 231, 258, 277
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	68
MalI	GATC	4 cut(s)	11, 124, 147, 234
MboI	GATC	4 cut(s)	9, 122, 145, 232
MflI	RGATCY	3 cut(s)	9, 122, 145
MluCI	AATT	2 cut(s)	163, 237
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	2 cut(s)	58, 287
MslI	CAYNNNNRTG	2 cut(s)	94, 287
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	2 cut(s)	186, 188
MwoI	GCNNNNNNNGC	3 cut(s)	185, 194, 306
NdeII	GATC	4 cut(s)	9, 122, 145, 232
NlaIII	CATG	2 cut(s)	224, 286
NspI	RCATGY	1 cut(s)	286
OliI	CACNNNNGTG	1 cut(s)	94
PauI	GCGCGC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	294
PflMI	CCANNNNNTGG	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	3 cut(s)	9, 122, 145
PteI	GCGCGC	1 cut(s)	184
RseI	CAYNNNNRTG	2 cut(s)	94, 287
Sau3AI	GATC	4 cut(s)	9, 122, 145, 232
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	7 cut(s)	37, 50, 71, 87, 181, 211, 302
SfaNI	GCATC	1 cut(s)	296
SmiMI	CAYNNNNRTG	2 cut(s)	94, 287
Sse9I	AATT	2 cut(s)	163, 237
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	244
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	235, 279
TasI	AATT	2 cut(s)	163, 237
TscAI	CASTG	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.