Rmu_sc0002636.1_g000033

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002636.1
Physical Location & Seq
Reverse (-)
124619 .. 125011
393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
atggttgctaatttagagatagaggatgaggatgaagagatttcaagtgactcgaatgagtttttgagctttgtggatgatggagataagcctttgtatcctggttgtacaaagactataaagttaaacggtatgacacaaacgttccgcatgctaagcatgattggcatggtgttgcctaaagggaatggggtacgtgaggctaaaaaaacacttgctacattgggggtggagtatgaaaggatttatgtttgtccaaatgactgcatcttatatagaaggtatcatgcagaagcaacaagttgtccaaactgtggtgaatcatggtggaaactgggtaggaataaaattgagaaggaatgtgttcctgggaagacggcaagacaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

5.15

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025541)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002636.1_g000033 Rmu_sc0002824.1_g000026
rosa_rugosa Rorug04G0025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 1 cut(s) 148
AclI AACGTT 1 cut(s) 143
AfaI GTAC 2 cut(s) 109, 195
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 45
AjnI CCWGG 2 cut(s) 100, 367
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 380
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 102, 369
BciVI GTATCC 1 cut(s) 108
BfuI GTATCC 1 cut(s) 108
BlpI GCTNAGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 102, 369
BmrFI CCNGG 2 cut(s) 102, 369
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 380
Bpu1102I GCTNAGC 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 102, 369
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 3 cut(s) 31, 37, 82
BseLI CCNNNNNNNGG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 314
Bsp1407I TGTACA 1 cut(s) 107
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 107
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 102, 369
Bst4CI ACNGT 2 cut(s) 131, 314
Bst6I CTCTTC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 31, 37, 82
BstMWI GCNNNNNNNGC 2 cut(s) 156, 165
BstNI CCWGG 2 cut(s) 102, 369
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 100, 367
BstV2I GAAGAC 1 cut(s) 380
BsuI GTATCC 1 cut(s) 108
BtsCI GGATG 3 cut(s) 31, 37, 82
Cac8I GCNNGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 108, 194
CviAII CATG 5 cut(s) 151, 160, 169, 287, 324
CviJI RGCY 3 cut(s) 69, 91, 203
CviKI_1 RGCY 3 cut(s) 69, 91, 203
CviQI GTAC 2 cut(s) 108, 194
DdeI CTNAG 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 100, 367
FaeI CATG 5 cut(s) 154, 163, 172, 290, 327
FatI CATG 5 cut(s) 150, 159, 168, 286, 323
FokI GGATG 3 cut(s) 38, 44, 89
Hin1II CATG 5 cut(s) 154, 163, 172, 290, 327
HinfI GANTC 2 cut(s) 50, 320
HphI GGTGA 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 273, 349
HpyCH4III ACNGT 2 cut(s) 131, 314
HpyCH4IV ACGT 2 cut(s) 143, 196
HpyCH4V TGCA 2 cut(s) 267, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 165
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 2 cut(s) 143, 196
Hsp92II CATG 5 cut(s) 154, 163, 172, 290, 327
LpnPI CCDG 5 cut(s) 87, 114, 320, 354, 381
LweI GCATC 1 cut(s) 276
MaeII ACGT 2 cut(s) 143, 196
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 2 cut(s) 47, 385
MluCI AATT 2 cut(s) 10, 348
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 16, 22, 193
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 102, 369
MvaI CCWGG 2 cut(s) 102, 369
MwoI GCNNNNNNNGC 2 cut(s) 156, 165
NlaIII CATG 5 cut(s) 154, 163, 172, 290, 327
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 154
PaeI GCATGC 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 314
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 197
Psp1406I AACGTT 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 100, 367
PspGI CCWGG 2 cut(s) 100, 367
RsaI GTAC 2 cut(s) 109, 195
RsaNI GTAC 2 cut(s) 108, 194
SaqAI TTAA 1 cut(s) 125
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 102, 369
SetI ASST 4 cut(s) 71, 146, 199, 284
SfaNI GCATC 1 cut(s) 276
SphI GCATGC 1 cut(s) 154
Sse9I AATT 2 cut(s) 10, 348
SsiI CCGC 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 100, 367
TaaI ACNGT 2 cut(s) 131, 314
TaiI ACGT 2 cut(s) 146, 199
TaqI TCGA 1 cut(s) 53
TasI AATT 2 cut(s) 10, 348
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 48, 252
Van91I CCANNNNNTGG 1 cut(s) 314
XceI RCATGY 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.