Rmu_sc0002824.1_g000026

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002824.1
Physical Location & Seq
Forward (+)
134427 .. 135029
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002824.1_g000026.1.cds

Sequence Viewer

Length: 507 bp
atgaatcctgatttagggatagaagaagatgaagaaggtatggagggcagtgaggatgaggcaatttcggaagactcgaatgagtttatgaagtttgtagaggatggagataagcctctatatcctagttgtaccaagacaaccaagctgaatgggaatgagttatcagggttagtttatgaggctaaaagaacactttgtgcattggggatggagtatgaaaagattcatgcttgtccaaatgactgcatcttatatagattgcagcatgccaatgcaaccagctgccccacttgtggtgaatcaaggtggaaactaggcagggataaatccaagaaaaaaggggtgctcgaaaaggtattctggtacttcccaccgatcccaaggttcaaaaggatgttccaatcaactgtttcagcaaaggaacttacttggcatgtcgatgatagaaagaaggatggaatgatgagacatccagcgaattcccccgacttggaaaattattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

168

Amino Acids

19.26

Weight (kDa)

5.32

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025541)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002636.1_g000033 Rmu_sc0002824.1_g000026
rosa_rugosa Rorug04G0025800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 1 cut(s) 481
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 2 cut(s) 133, 368
AfiI CCNNNNNNNGG 3 cut(s) 14, 296, 493
AgsI TTSAA 1 cut(s) 391
AluBI AGCT 2 cut(s) 148, 285
AluI AGCT 2 cut(s) 148, 285
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 265, 285
ApoI RAATTY 1 cut(s) 481
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 272, 277
BccI CCATC 3 cut(s) 98, 205, 452
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 2 cut(s) 126, 317
BisI GCNGC 2 cut(s) 266, 286
BlsI GCNGC 2 cut(s) 267, 287
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 383
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 296, 493
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 6 cut(s) 61, 109, 216, 402, 463, 472
BseLI CCNNNNNNNGG 3 cut(s) 14, 296, 493
BseXI GCAGC 2 cut(s) 272, 277
BsiHKAI GWGCWC 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 14, 296, 493
BsmAI GTCTC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 378
BspPI GGATC 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 270
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 6 cut(s) 61, 109, 216, 402, 463, 472
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 1 cut(s) 378
BstNSI RCATGY 2 cut(s) 272, 440
BstV1I GCAGC 2 cut(s) 272, 277
BstV2I GAAGAC 1 cut(s) 78
BtsCI GGATG 6 cut(s) 61, 109, 216, 402, 463, 472
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 132, 367
CviAII CATG 3 cut(s) 230, 269, 437
CviJI RGCY 4 cut(s) 115, 148, 185, 285
CviKI_1 RGCY 4 cut(s) 115, 148, 185, 285
CviQI GTAC 2 cut(s) 132, 367
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
DraIII CACNNNGTG 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 3 cut(s) 233, 272, 440
FatI CATG 3 cut(s) 229, 268, 436
Fnu4HI GCNGC 2 cut(s) 266, 286
FokI GGATG 6 cut(s) 68, 116, 223, 409, 459, 470
Fsp4HI GCNGC 2 cut(s) 266, 286
FspBI CTAG 2 cut(s) 126, 317
GluI GCNGC 2 cut(s) 266, 286
Hin1II CATG 3 cut(s) 233, 272, 440
HinfI GANTC 4 cut(s) 4, 74, 226, 302
HphI GGTGA 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 29, 448
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 203, 249, 265, 278
Hsp92II CATG 3 cut(s) 233, 272, 440
Kzo9I GATC 1 cut(s) 378
LpnPI CCDG 6 cut(s) 21, 153, 295, 307, 349, 489
Lsp1109I GCAGC 2 cut(s) 272, 277
LweI GCATC 1 cut(s) 258
MaeI CTAG 2 cut(s) 126, 317
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 4 cut(s) 35, 38, 44, 83
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 63, 481, 499
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 6 cut(s) 37, 46, 52, 94, 126, 175
MroXI GAANNNNTTC 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 273, 441
MspA1I CMGCKG 1 cut(s) 285
NdeII GATC 1 cut(s) 378
NlaIII CATG 3 cut(s) 233, 272, 440
NspI RCATGY 2 cut(s) 272, 440
PaeI GCATGC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 4, 226, 302
PkrI GCNGC 2 cut(s) 267, 287
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 285
RsaI GTAC 2 cut(s) 133, 368
RsaNI GTAC 2 cut(s) 132, 367
RseI CAYNNNNRTG 2 cut(s) 273, 441
SatI GCNGC 2 cut(s) 266, 286
Sau3AI GATC 1 cut(s) 378
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 351
SetI ASST 6 cut(s) 40, 150, 287, 311, 360, 389
SfaNI GCATC 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 273, 441
SphI GCATGC 1 cut(s) 272
Sse9I AATT 3 cut(s) 63, 481, 499
SspMI CTAG 2 cut(s) 126, 317
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 77, 351, 441
TasI AATT 3 cut(s) 63, 481, 499
TfiI GAWTC 3 cut(s) 4, 226, 302
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 265, 285
TspDTI ATGAA 5 cut(s) 17, 45, 104, 218, 234
TspRI CASTG 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 1 cut(s) 481
XceI RCATGY 2 cut(s) 272, 440
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 126, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.