Rmu_sc0002676.1_g000017

glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002676.1
OG0014754
Physical Location & Seq
Reverse (-)
127504 .. 128752
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
atgccacacctaaaccgtgtagcctcatttaatatccaagctagtatatattggggcatctatactcagaactcagaaggtggtagccaacgaaatatgtctgccaaactattctcactagaagctctttcctcctccttcaaagtccttagcaaaccaaagagcacttccattttgcaacacagggctagcaaagcccatgcaacccacttcaagtttcagaaatacaactcccttgcttatcaattaggagagctaatgtcaaatactacactgttttttcagtttgagggtacattgctgaaatcatcttcactttttccttacttcatgcttgtggcctttgaagctagtggcttccttagagctcttactttgtttcttttgtacccttttgtttgtttggttgggggagagctaggtctcaacataatggtgttcatatgtttctttggtattagaaaggaaaaaatgaggattgggaattctgtgttgcccaagtttttcttggaagatgttgggagtgaaggctttgatgtggtgatgaagtgtgggaaaaaagtgggagtgagtgacttgcctagagtcatggttgaaggttttctgaaggactatgttggggttgatgttgttgttgcaagagagctcaaagtggtgggtggatactgtgtgggtttgatggaggaaatgaacacaaaaagtttggaggcaagtcaggttcttggagatgaaaaaccaagtaatagtcaaacaattggtatttgttgccacaacaagtttctccatcggcaactcctttctcaaaattgcaagaatgttttcttggtgagtgaagctgagaagagaaactggaaaagccttccaagggagaaatacccaaaaccattgatcttccatgatggaagattagctttcagaccaaccccaattgccaccttggccatgttcatgtggttaccactaggattttgcatctacttcataagattcatagttggcatgtttctacctcactgtgtttgcaatccaatcttagccttcactggtacaatcaccacagcttcagtacagcccagttccttatcaaacacctcagcaaaaggggaagatcaacgaaaaccaagagggaaactttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

378

Amino Acids

42.36

Weight (kDa)

9.42

Isoelectric Point (pI)

26.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 91 - 276 1e-67 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014754)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g38280
malus_domestica MD08G1174800.v1.1 MD15G1361500.v1.1
prunus_persica Prupe.1G508900_v2.0.a1
pyrus_communis pycom08g15010 pycom15g32310
rosa_chinensis RchiOBHm_Chr7g0240281
rosa_laevigata RLG00000000689
rosa_multiflora Rmu_sc0002676.1_g000017 Rmu_sc0002676.1_g000018
rosa_roxburghii Rroxscaffold_3G00220260
rosa_rugosa Rorug07G0334600
rosa_samantha Rh7AG488800 Rh7BG461700 Rh7CG504800 Rh7DG472900
rosa_wichuraiana Rw7G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 2 cut(s) 626, 1047
AfaI GTAC 4 cut(s) 295, 389, 1048, 1068
AfiI CCNNNNNNNGG 1 cut(s) 865
AgsI TTSAA 4 cut(s) 142, 214, 347, 596
AjuI GAANNNNNNNTTGG 4 cut(s) 151, 183, 806, 838
Alw21I GWGCWC 3 cut(s) 167, 370, 648
Alw26I GTCTC 1 cut(s) 428
AoxI GGCC 2 cut(s) 339, 939
ApoI RAATTY 1 cut(s) 484
Asp700I GAANNNNTTC 2 cut(s) 600, 818
AsuHPI GGTGA 3 cut(s) 553, 838, 1045
AsuNHI GCTAGC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 941
BanII GRGCYC 2 cut(s) 370, 648
Bbv12I GWGCWC 3 cut(s) 167, 370, 648
BbvCI CCTCAGC 1 cut(s) 1093
BccI CCATC 3 cut(s) 673, 792, 893
BciVI GTATCC 1 cut(s) 656
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 7 cut(s) 42, 119, 189, 351, 419, 582, 962
BfuI GTATCC 1 cut(s) 656
BglI GCCNNNNNGGC 1 cut(s) 938
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 2 cut(s) 66, 981
BmtI GCTAGC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 1068
Bpu10I CCTNAGC 2 cut(s) 149, 1093
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 863, 936
Bsc4I CCNNNNNNNGG 1 cut(s) 865
Bse1I ACTGG 3 cut(s) 854, 1048, 1074
Bse3DI GCAATG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 863, 936
BseLI CCNNNNNNNGG 1 cut(s) 865
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 4 cut(s) 80, 87, 828, 1107
BseNI ACTGG 3 cut(s) 854, 1048, 1074
BseRI GAGGAG 1 cut(s) 124
BshFI GGCC 2 cut(s) 341, 941
BsiHKAI GWGCWC 3 cut(s) 167, 370, 648
BslI CCNNNNNNNGG 1 cut(s) 865
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 2 cut(s) 341, 941
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 3 cut(s) 167, 370, 648
Bsp143I GATC 2 cut(s) 888, 1108
BspANI GGCC 2 cut(s) 341, 941
BspCNI CTCAG 4 cut(s) 79, 86, 829, 1106
BspOI GCTAGC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 3 cut(s) 854, 1048, 1074
BssECI CCNNGG 2 cut(s) 863, 936
BssMI GATC 2 cut(s) 888, 1108
BssT1I CCWWGG 2 cut(s) 863, 936
Bst4CI ACNGT 4 cut(s) 17, 276, 668, 1016
Bst6I CTCTTC 1 cut(s) 836
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 7 cut(s) 66, 73, 149, 362, 837, 1033, 1093
BstEII GGTNACC 1 cut(s) 954
BstKTI GATC 2 cut(s) 891, 1111
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 888, 1108
BstMWI GCNNNNNNNGC 3 cut(s) 194, 347, 938
BstNSI RCATGY 1 cut(s) 1003
BstPI GGTNACC 1 cut(s) 954
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 2 cut(s) 341, 941
BtsIMutI CAGTG 3 cut(s) 272, 1012, 1041
Cac8I GCNNGC 1 cut(s) 190
Csp6I GTAC 4 cut(s) 294, 388, 1047, 1067
CviAII CATG 7 cut(s) 200, 331, 589, 896, 943, 949, 1000
CviQI GTAC 4 cut(s) 294, 388, 1047, 1067
DdeI CTNAG 7 cut(s) 66, 73, 149, 362, 837, 1033, 1093
DpnI GATC 2 cut(s) 890, 1110
DpnII GATC 2 cut(s) 888, 1108
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 836
EarI CTCTTC 1 cut(s) 836
Ecl136II GAGCTC 2 cut(s) 368, 646
Eco130I CCWWGG 2 cut(s) 863, 936
Eco24I GRGCYC 2 cut(s) 370, 648
Eco31I GGTCTC 1 cut(s) 428
Eco53kI GAGCTC 2 cut(s) 368, 646
Eco57I CTGAAG 2 cut(s) 626, 1047
Eco91I GGTNACC 1 cut(s) 954
EcoICRI GAGCTC 2 cut(s) 368, 646
EcoO65I GGTNACC 1 cut(s) 954
EcoRI GAATTC 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 863, 936
EcoT38I GRGCYC 2 cut(s) 370, 648
ErhI CCWWGG 2 cut(s) 863, 936
FaeI CATG 7 cut(s) 203, 334, 592, 899, 946, 952, 1003
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 895, 927
FatI CATG 7 cut(s) 199, 330, 588, 895, 942, 948, 999
FauNDI CATATG 1 cut(s) 443
FriOI GRGCYC 2 cut(s) 370, 648
FspBI CTAG 7 cut(s) 42, 119, 189, 351, 419, 582, 962
HaeIII GGCC 2 cut(s) 341, 941
Hin1II CATG 7 cut(s) 203, 334, 592, 899, 946, 952, 1003
HinfI GANTC 2 cut(s) 585, 987
HphI GGTGA 3 cut(s) 553, 838, 1045
Hpy188I TCNGA 5 cut(s) 69, 76, 222, 606, 917
HpyAV CCTTC 7 cut(s) 71, 148, 521, 590, 601, 869, 1048
HpyCH4III ACNGT 4 cut(s) 17, 276, 668, 1016
HpyCH4V TGCA 6 cut(s) 178, 203, 638, 810, 972, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 347, 938
HpyF3I CTNAG 7 cut(s) 66, 73, 149, 362, 837, 1033, 1093
Hsp92II CATG 7 cut(s) 203, 334, 592, 899, 946, 952, 1003
Kzo9I GATC 2 cut(s) 888, 1108
LpnPI CCDG 5 cut(s) 169, 701, 835, 1029, 1087
LweI GCATC 2 cut(s) 66, 981
MaeI CTAG 7 cut(s) 42, 119, 189, 351, 419, 582, 962
MaeIII GTNAC 2 cut(s) 572, 954
MalI GATC 2 cut(s) 890, 1110
MboI GATC 2 cut(s) 888, 1108
MboII GAAGA 6 cut(s) 303, 524, 853, 883, 915, 1118
MfeI CAATTG 2 cut(s) 753, 927
MhlI GDGCHC 3 cut(s) 167, 370, 648
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 5 cut(s) 245, 484, 753, 805, 927
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 1 cut(s) 594
Mox20I TGGCCA 1 cut(s) 941
MroXI GAANNNNTTC 2 cut(s) 600, 818
MscI TGGCCA 1 cut(s) 941
MseI TTAA 2 cut(s) 30, 1135
MslI CAYNNNNRTG 3 cut(s) 335, 434, 947
Msp20I TGGCCA 1 cut(s) 941
MunI CAATTG 2 cut(s) 753, 927
MwoI GCNNNNNNNGC 3 cut(s) 194, 347, 938
NdeI CATATG 1 cut(s) 443
NdeII GATC 2 cut(s) 888, 1108
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 7 cut(s) 203, 334, 592, 899, 946, 952, 1003
NmuCI GTSAC 1 cut(s) 572
NspI RCATGY 1 cut(s) 1003
PdmI GAANNNNTTC 2 cut(s) 600, 818
PfeI GAWTC 1 cut(s) 987
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
Psp124BI GAGCTC 2 cut(s) 370, 648
PspEI GGTNACC 1 cut(s) 954
RsaI GTAC 4 cut(s) 295, 389, 1048, 1068
RsaNI GTAC 4 cut(s) 294, 388, 1047, 1067
RseI CAYNNNNRTG 3 cut(s) 335, 434, 947
SacI GAGCTC 2 cut(s) 370, 648
SaqAI TTAA 2 cut(s) 30, 1135
Sau3AI GATC 2 cut(s) 888, 1108
SchI GAGTC 1 cut(s) 594
SduI GDGCHC 3 cut(s) 167, 370, 648
SfaNI GCATC 2 cut(s) 66, 981
SmiMI CAYNNNNRTG 3 cut(s) 335, 434, 947
Sse9I AATT 5 cut(s) 245, 484, 753, 805, 927
SspMI CTAG 7 cut(s) 42, 119, 189, 351, 419, 582, 962
SstI GAGCTC 2 cut(s) 370, 648
StyI CCWWGG 2 cut(s) 863, 936
TaaI ACNGT 4 cut(s) 17, 276, 668, 1016
TasI AATT 5 cut(s) 245, 484, 753, 805, 927
TatI WGTACW 1 cut(s) 1066
TfiI GAWTC 1 cut(s) 987
Tru1I TTAA 2 cut(s) 30, 1135
Tru9I TTAA 2 cut(s) 30, 1135
TscAI CASTG 3 cut(s) 279, 1019, 1048
TseFI GTSAC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 8 cut(s) 319, 430, 560, 704, 744, 937, 970, 979
TspRI CASTG 3 cut(s) 279, 1019, 1048
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmnI GAANNNNTTC 2 cut(s) 600, 818
XspI CTAG 7 cut(s) 42, 119, 189, 351, 419, 582, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.