Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002701.1

Orthogroup ID

OG0025542

Physical Location & Seq

Genomic Coordinates Reverse (-)

188354 .. 189840

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggaatcagttttggtggtctccattgttctcacctgccatgactcagtagctcaccctgcagcactcaaatcaaattgcctaattgtacagctaattttcctgcaaagatgcattcttatgcttaaaacggttgctaccttgaggagagatgctgctgctcaggagctgatgtgtgcctggaatgactttggtttcaatgacattctttcagtatacagtggccgacatggtgttcactattgggtttgtgatgtgaaagctggaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

90

Amino Acids

10.01

Weight (kDa)

6.87

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025542)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000057
rosa_samantha	Rh5CG096300
rosa_wichuraiana	Rw5G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	223
AfaI	GTAC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	4 cut(s)	53, 94, 169, 263
AluI	AGCT	4 cut(s)	53, 94, 169, 263
Alw26I	GTCTC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	3 cut(s)	62, 155, 158
AsuHPI	GGTGA	2 cut(s)	25, 47
BbvI	GCAGC	3 cut(s)	74, 142, 145
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	63, 156, 159
BlsI	GCNGC	3 cut(s)	64, 157, 160
Bme1390I	CCNGG	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	2 cut(s)	101, 142
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
BseBI	CCWGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	60, 176
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	74, 142, 145
BshFI	GGCC	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	88
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	59, 175
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	88
BssNAI	GTATAC	1 cut(s)	217
Bst1107I	GTATAC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	133, 221
BstAUI	TGTACA	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	46, 162
BstMAI	GTCTC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	74, 142, 145
BstZ17I	GTATAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	41, 230
CviJI	RGCY	5 cut(s)	53, 94, 169, 225, 263
CviKI_1	RGCY	5 cut(s)	53, 94, 169, 225, 263
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	46, 162
EaeI	YGGCCR	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	179
EcoT22I	ATGCAT	1 cut(s)	116
FaeI	CATG	2 cut(s)	44, 233
FaiI	YATR	4 cut(s)	42, 122, 217, 231
FatI	CATG	2 cut(s)	40, 229
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	63, 156, 159
Fsp4HI	GCNGC	3 cut(s)	63, 156, 159
GluI	GCNGC	3 cut(s)	63, 156, 159
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	44, 233
HinfI	GANTC	2 cut(s)	5, 44
HphI	GGTGA	2 cut(s)	25, 47
Hpy166II	GTNNAC	2 cut(s)	217, 238
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	217, 238
HpyCH4III	ACNGT	2 cut(s)	133, 221
HpyCH4V	TGCA	3 cut(s)	62, 106, 114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	46, 162
Hsp92II	CATG	2 cut(s)	44, 233
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	49, 72, 116, 149, 166, 193, 249
Lsp1109I	GCAGC	3 cut(s)	74, 142, 145
LweI	GCATC	2 cut(s)	101, 142
MluCI	AATT	3 cut(s)	76, 84, 96
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	59
NlaIII	CATG	2 cut(s)	44, 233
NsiI	ATGCAT	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	44
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	64, 157, 160
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	63, 156, 159
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	6 cut(s)	38, 55, 96, 143, 171, 265
SfaNI	GCATC	2 cut(s)	101, 142
SfcI	CTRYAG	1 cut(s)	60
SgeI	CNNG	9 cut(s)	48, 53, 71, 115, 154, 176, 192, 193, 242
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	3 cut(s)	76, 84, 96
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	133, 221
TasI	AATT	3 cut(s)	76, 84, 96
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	3 cut(s)	62, 155, 158
TspRI	CASTG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.