Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025542

Physical Location & Seq

Genomic Coordinates Forward (+)

7681949 .. 7685862

Gene Structure 3914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAAATTACCTCAATCCTTGTCAGAGATGGTATCCATAGTTGCAGCTTCACTCAGTATGGATTGACTGAGGCGTCGCTAGGTTTCAAAACTTCCTCTGTTCTTCGTCCTAGCCAAGAGCACGGTTGGAAGAGGGATGAACAAGCAGGTTCACCCGGGGATGACTTTGGTTTCAATGACATTCTTTGGGTATACAGTGGCCGACATGGTGTTCACTATTGGGTTTGTGATGAGAAAGCTGGAAGGAACAGTGTAGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

87

Amino Acids

9.74

Weight (kDa)

6.02

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	53 - 80	8.8e-07	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0025542)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000057
rosa_samantha	Rh5CG096300
rosa_wichuraiana	Rw5G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	88, 175
AluBI	AGCT	2 cut(s)	48, 239
AluI	AGCT	2 cut(s)	48, 239
Alw21I	GWGCWC	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	45
AsuC2I	CCSGG	2 cut(s)	156, 157
AsuHPI	GGTGA	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	44
BcnI	CCSGG	2 cut(s)	156, 157
BfaI	CTAG	2 cut(s)	80, 111
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	2 cut(s)	156, 157
BmeT110I	CYCGRG	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	156, 157
BpuMI	CCSGG	2 cut(s)	156, 157
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	155, 156
BseDI	CCNNGG	2 cut(s)	155, 156
BseGI	GGATG	2 cut(s)	142, 166
BseMII	CTCAG	2 cut(s)	60, 68
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	61, 67
BspMI	ACCTGC	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	155, 156
BssNAI	GTATAC	1 cut(s)	193
BssNI	GRCGYC	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	193
Bst4CI	ACNGT	3 cut(s)	125, 197, 251
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	54, 69
BstF5I	GGATG	2 cut(s)	142, 166
BstSCI	CCNGG	2 cut(s)	154, 155
BstV1I	GCAGC	1 cut(s)	57
BstZ17I	GTATAC	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	142, 166
BtsIMutI	CAGTG	2 cut(s)	202, 256
BveI	ACCTGC	1 cut(s)	137
Cfr9I	CCCGGG	1 cut(s)	155
CseI	GACGC	1 cut(s)	63
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	4 cut(s)	48, 114, 201, 239
CviKI_1	RGCY	4 cut(s)	48, 114, 201, 239
DdeI	CTNAG	2 cut(s)	54, 69
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	155
FaeI	CATG	1 cut(s)	209
FaiI	YATR	4 cut(s)	39, 60, 193, 207
FatI	CATG	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	149, 173
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	2 cut(s)	80, 111
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	209
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	3 cut(s)	152, 193, 214
Hpy188I	TCNGA	1 cut(s)	26
Hpy8I	GTNNAC	3 cut(s)	152, 193, 214
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	3 cut(s)	125, 197, 251
HpyCH4V	TGCA	1 cut(s)	45
HpyF3I	CTNAG	2 cut(s)	54, 69
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	209
LpnPI	CCDG	3 cut(s)	132, 169, 225
Lsp1109I	GCAGC	1 cut(s)	57
MaeI	CTAG	2 cut(s)	80, 111
MboII	GAAGA	2 cut(s)	95, 142
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	22, 64, 106, 126
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	156, 157
NciI	CCSGG	2 cut(s)	156, 157
NlaIII	CATG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	47
SatI	GCNGC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	156, 157
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	14, 50, 85, 151, 241
SmaI	CCCGGG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	2 cut(s)	80, 111
StyD4I	CCNGG	2 cut(s)	154, 155
TaaI	ACNGT	3 cut(s)	125, 197, 251
TasI	AATT	1 cut(s)	6
TscAI	CASTG	2 cut(s)	202, 256
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	17, 153
TspMI	CCCGGG	1 cut(s)	155
TspRI	CASTG	2 cut(s)	202, 256
XmaI	CCCGGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	80, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.