Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0025542

Physical Location & Seq

Genomic Coordinates Reverse (-)

34232673 .. 34235105

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTCTCCATTGTTCTCACCTGTCATGACTCAGTAGCTGACCCTGCAGCACTCAAATCAAATTGCCTAATTGTACAGCTGATTTTCCTGCAAAGATGCATTCTTATGCTTAAAACGGTTGCTACCTTGAGGAGAGATGACTTTGGTTTCAATGACATTCTTTGGGTATACAGTGGCCGACATGGTGTTCACTATTGGGTTTGTGATCAGAAAGCTGGAAGAGTTGTGAGAATCTGTATTCAATATTTGCAATATGACTTGCTTATGATTCAGCTTGCATTAGCTAAGATTTTTGGGGTAGACCAAGCTGTTGCATTGAAACTATTGGGATATGAAAAGATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

115

Amino Acids

13.09

Weight (kDa)

8.65

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	38 - 72	1.1e-07	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0025542)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002701.1_g000057
rosa_samantha	Rh5CG096300
rosa_wichuraiana	Rw5G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	168, 300
AcoI	YGGCCR	1 cut(s)	175
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	151, 242, 319
AluBI	AGCT	6 cut(s)	38, 79, 215, 274, 284, 308
AluI	AGCT	6 cut(s)	38, 79, 215, 274, 284, 308
Alw26I	GTCTC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	205, 339
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	44
BspHI	TCATGA	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	73
BssMI	GATC	2 cut(s)	205, 339
BssNAI	GTATAC	1 cut(s)	169
Bst1107I	GTATAC	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	118, 173
Bst6I	CTCTTC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	31, 285
BstKTI	GATC	2 cut(s)	208, 342
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	2 cut(s)	205, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	2 cut(s)	26, 182
CviJI	RGCY	7 cut(s)	38, 79, 177, 215, 274, 284, 308
CviKI_1	RGCY	7 cut(s)	38, 79, 177, 215, 274, 284, 308
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	31, 285
DpnI	GATC	2 cut(s)	207, 341
DpnII	GATC	2 cut(s)	205, 339
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	101
FaeI	CATG	2 cut(s)	29, 185
FaiI	YATR	7 cut(s)	27, 107, 169, 183, 255, 266, 333
FatI	CATG	2 cut(s)	25, 181
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	2 cut(s)	168, 300
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	29, 185
HinfI	GANTC	3 cut(s)	29, 231, 268
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	3 cut(s)	169, 190, 301
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	3 cut(s)	169, 190, 301
HpyCH4III	ACNGT	2 cut(s)	118, 173
HpyCH4V	TGCA	6 cut(s)	47, 91, 99, 250, 278, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	31, 285
Hsp92II	CATG	2 cut(s)	29, 185
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	205, 339
LpnPI	CCDG	4 cut(s)	34, 57, 101, 201
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	86
MalI	GATC	2 cut(s)	207, 341
MboI	GATC	2 cut(s)	205, 339
MboII	GAAGA	1 cut(s)	231
MluCI	AATT	2 cut(s)	61, 69
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	123
Mph1103I	ATGCAT	1 cut(s)	101
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	2 cut(s)	205, 339
NlaIII	CATG	2 cut(s)	29, 185
NsiI	ATGCAT	1 cut(s)	101
PagI	TCATGA	1 cut(s)	25
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	231, 268
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	205, 339
SchI	GAGTC	1 cut(s)	23
SetI	ASST	8 cut(s)	23, 40, 81, 128, 217, 276, 286, 310
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	61, 69
SspI	AATATT	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	118, 173
TasI	AATT	2 cut(s)	61, 69
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	231, 268
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	168, 300
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.