Rmu_sc0002848.1_g000017

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002848.1
OG0031229
Physical Location & Seq
Forward (+)
64652 .. 67399
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002848.1_g000017.1.cds

Sequence Viewer

Length: 846 bp
ctgagaagccaccgccgcccatcatcactctggcgggcatccgcacccttcccatcagggcaaccgaaaagttccccgccttggatcggtcttggaaaaactcaaagcccgctagaatcaggtcctccttgggttgacctcgaccgaaccagctacgtcgccgatcaagcagagctcgccgcctccaaccctgaagtcgctgctaccaccactggtctggagagcgccttggatcacagtcaaaaccgtcgcgctgctcggaaaaacgatttggattcgactgcaaacggatcgctagcgttgccaattcacacccgttgcagggagagggcagctccactctcttggttctatgaccggaaggaacgacgtcgctacgtcctgcaacaaacggagatccatcgggacgacgaagaagctccggtcggagctaactcgccggtggcgaactcggatctcgatttgaacgtcgtcgtttctctccactctatctccagcacgactcctcttctctctcttgcaaattcctacaatctgtttcgggaggaagaacaagaagaaggcaaatttgactgtaggtgcgaaaggtgggtggtagccggtgatcggaatccggtggccggtgaccggattccggcgaaaattggccggattccggcgaagttggccggaatccggcggccgtatcacgaattggcagcagaagctttcttcttagtggctattgtctttgacaaaatgggaagactagaggacagagaagaggctgcaacttcttttaagaatcacattttggcccttgagaaccctcaagatgaggaagatcctctgatcgacatgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04657 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04657 map04914 map05166
Pfam Domains
Protein Families
ANAPC5

Protein Analysis

281

Amino Acids

31.35

Weight (kDa)

5.6

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031229)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002848.1_g000017
rosa_samantha Rh1CG288500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 373
AccII CGCG 1 cut(s) 252
AciI CCGC 8 cut(s) 13, 16, 34, 42, 77, 110, 180, 679
AclWI GGATC 6 cut(s) 92, 240, 298, 391, 462, 818
AcoI YGGCCR 4 cut(s) 618, 646, 666, 680
AcsI RAATTY 2 cut(s) 523, 566
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 837
AgsI TTSAA 1 cut(s) 466
AjuI GAANNNNNNNTTGG 4 cut(s) 254, 286, 776, 808
AluBI AGCT 6 cut(s) 153, 175, 335, 419, 431, 707
AluI AGCT 6 cut(s) 153, 175, 335, 419, 431, 707
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 6 cut(s) 92, 240, 298, 391, 462, 818
AoxI GGCC 5 cut(s) 618, 646, 666, 680, 795
ApeKI GCWGC 5 cut(s) 200, 254, 332, 698, 767
ApoI RAATTY 2 cut(s) 523, 566
AspLEI GCGC 2 cut(s) 227, 254
AspS9I GGNCC 2 cut(s) 122, 796
AsuHPI GGTGA 2 cut(s) 614, 635
AsuNHI GCTAGC 1 cut(s) 295
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 751
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 5 cut(s) 187, 241, 344, 710, 754
BccI CCATC 3 cut(s) 28, 61, 408
BceAI ACGGC 1 cut(s) 667
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BfaI CTAG 3 cut(s) 113, 296, 749
BfmI CTRYAG 1 cut(s) 574
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 8 cut(s) 16, 180, 201, 255, 333, 680, 699, 768
BlsI GCNGC 8 cut(s) 17, 181, 202, 256, 334, 681, 700, 769
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 122, 796
BmsI GCATC 1 cut(s) 47
BmtI GCTAGC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 751
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 2 cut(s) 239, 478
BpuEI CTTGAG 2 cut(s) 795, 821
BsaBI GATNNNNATC 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 370
BsaJI CCNNGG 3 cut(s) 80, 128, 228
BsaWI WCCGGW 4 cut(s) 357, 421, 613, 627
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bse118I RCCGGY 3 cut(s) 439, 599, 620
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 80, 128, 228
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 609
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 495
BseX3I CGGCCG 1 cut(s) 680
BseXI GCAGC 5 cut(s) 187, 241, 344, 710, 754
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 3 cut(s) 145, 426, 683
BshFI GGCC 5 cut(s) 620, 648, 668, 682, 797
BsiEI CGRYCG 3 cut(s) 145, 426, 683
BsiHKAI GWGCWC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 5 cut(s) 620, 648, 668, 682, 797
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
BspACI CCGC 8 cut(s) 13, 16, 34, 42, 77, 110, 180, 679
BspANI GGCC 5 cut(s) 620, 648, 668, 682, 797
BspFNI CGCG 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 6 cut(s) 92, 240, 298, 391, 462, 818
BsrFI RCCGGY 3 cut(s) 439, 599, 620
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 3 cut(s) 439, 599, 620
BssECI CCNNGG 3 cut(s) 80, 128, 228
BssMI GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 3 cut(s) 80, 128, 228
Bst4CI ACNGT 3 cut(s) 239, 248, 575
Bst6I CTCTTC 2 cut(s) 513, 756
BstACI GRCGYC 1 cut(s) 370
BstC8I GCNNGC 4 cut(s) 36, 110, 177, 297
BstDEI CTNAG 2 cut(s) 2, 715
BstEII GGTNACC 1 cut(s) 623
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 227, 254
BstKTI GATC 9 cut(s) 87, 166, 235, 293, 399, 457, 607, 826, 834
BstMBI GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
BstMCI CGRYCG 3 cut(s) 145, 426, 683
BstMWI GCNNNNNNNGC 6 cut(s) 15, 167, 176, 301, 665, 704
BstNSI RCATGY 1 cut(s) 841
BstPI GGTNACC 1 cut(s) 623
BstSFI CTRYAG 1 cut(s) 574
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 5 cut(s) 187, 241, 344, 710, 754
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 3 cut(s) 396, 454, 823
BstXI CCANNNNNNTGG 2 cut(s) 217, 345
BstYI RGATCY 3 cut(s) 396, 454, 823
BstZI CGGCCG 1 cut(s) 680
BsuRI GGCC 5 cut(s) 620, 648, 668, 682, 797
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 4 cut(s) 36, 110, 177, 297
CfoI GCGC 2 cut(s) 227, 254
Cfr10I RCCGGY 3 cut(s) 439, 599, 620
Cfr13I GGNCC 2 cut(s) 122, 796
CviAII CATG 1 cut(s) 838
DdeI CTNAG 2 cut(s) 2, 715
DpnI GATC 9 cut(s) 86, 165, 234, 292, 398, 456, 606, 825, 833
DpnII GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
EaeI YGGCCR 4 cut(s) 618, 646, 666, 680
EagI CGGCCG 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 513, 756
EarI CTCTTC 2 cut(s) 513, 756
Ecl136II GAGCTC 1 cut(s) 175
EclXI CGGCCG 1 cut(s) 680
Eco130I CCWWGG 3 cut(s) 80, 128, 228
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 122
Eco52I CGGCCG 1 cut(s) 680
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 122
EcoO65I GGTNACC 1 cut(s) 623
EcoT14I CCWWGG 3 cut(s) 80, 128, 228
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 3 cut(s) 80, 128, 228
FaeI CATG 1 cut(s) 841
FaiI YATR 2 cut(s) 354, 839
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 837
FauI CCCGC 3 cut(s) 27, 84, 117
Fnu4HI GCNGC 8 cut(s) 16, 180, 201, 255, 333, 680, 699, 768
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 8 cut(s) 16, 180, 201, 255, 333, 680, 699, 768
FspBI CTAG 3 cut(s) 113, 296, 749
GlaI GCGC 2 cut(s) 226, 253
GluI GCNGC 8 cut(s) 16, 180, 201, 255, 333, 680, 699, 768
GsuI CTGGAG 2 cut(s) 239, 478
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 5 cut(s) 620, 648, 668, 682, 797
HhaI GCGC 2 cut(s) 227, 254
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 1 cut(s) 841
Hin6I GCGC 2 cut(s) 225, 252
HinP1I GCGC 2 cut(s) 225, 252
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 8 cut(s) 116, 275, 502, 610, 631, 652, 672, 784
HphI GGTGA 2 cut(s) 614, 635
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 5 cut(s) 261, 428, 454, 609, 831
Hpy188III TCNNGA 6 cut(s) 218, 404, 458, 542, 689, 812
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 7 cut(s) 161, 252, 372, 375, 413, 473, 476
HpyAV CCTTC 3 cut(s) 58, 355, 554
HpyCH4III ACNGT 3 cut(s) 239, 248, 575
HpyCH4IV ACGT 4 cut(s) 156, 370, 378, 468
HpyCH4V TGCA 5 cut(s) 284, 321, 385, 521, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 167, 176, 301, 665, 704
HpyF3I CTNAG 2 cut(s) 2, 715
HpySE526I ACGT 4 cut(s) 156, 370, 378, 468
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 1 cut(s) 841
HspAI GCGC 2 cut(s) 225, 252
Kzo9I GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
LmnI GCTCC 3 cut(s) 340, 424, 428
Lsp1109I GCAGC 5 cut(s) 187, 241, 344, 710, 754
LweI GCATC 1 cut(s) 47
MaeI CTAG 3 cut(s) 113, 296, 749
MaeII ACGT 4 cut(s) 156, 370, 378, 468
MaeIII GTNAC 1 cut(s) 623
MalI GATC 9 cut(s) 86, 165, 234, 292, 398, 456, 606, 825, 833
MboI GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
MboII GAAGA 8 cut(s) 425, 500, 560, 569, 703, 756, 773, 833
MflI RGATCY 3 cut(s) 396, 454, 823
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 5 cut(s) 306, 523, 566, 642, 692
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 2 cut(s) 210, 406
MseI TTAA 1 cut(s) 780
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 6 cut(s) 15, 167, 176, 301, 665, 704
NdeII GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 1 cut(s) 841
NmuCI GTSAC 1 cut(s) 623
NspI RCATGY 1 cut(s) 841
PciI ACATGT 1 cut(s) 837
PcsI WCGNNNNNNNCGW 2 cut(s) 443, 465
PfeI GAWTC 7 cut(s) 116, 275, 610, 631, 652, 672, 784
PkrI GCNGC 8 cut(s) 17, 181, 202, 256, 334, 681, 700, 769
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PpuMI RGGWCCY 1 cut(s) 122
PscI ACATGT 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 122
PspEI GGTNACC 1 cut(s) 623
PspPI GGNCC 2 cut(s) 122, 796
PspPPI RGGWCCY 1 cut(s) 122
PsuI RGATCY 3 cut(s) 396, 454, 823
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 780
SatI GCNGC 8 cut(s) 16, 180, 201, 255, 333, 680, 699, 768
Sau3AI GATC 9 cut(s) 84, 163, 232, 290, 396, 454, 604, 823, 831
Sau96I GGNCC 2 cut(s) 122, 796
SchI GAGTC 1 cut(s) 496
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 574
SgrAI CRCCGGYG 1 cut(s) 439
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 800, 810
SmoI CTYRAG 2 cut(s) 800, 810
Sse9I AATT 5 cut(s) 306, 523, 566, 642, 692
SsiI CCGC 8 cut(s) 13, 16, 34, 42, 77, 110, 180, 679
SspMI CTAG 3 cut(s) 113, 296, 749
SstI GAGCTC 1 cut(s) 177
StyI CCWWGG 3 cut(s) 80, 128, 228
TaaI ACNGT 3 cut(s) 239, 248, 575
TaiI ACGT 4 cut(s) 159, 373, 381, 471
TaqI TCGA 4 cut(s) 141, 278, 459, 834
TaqII GACCGA 2 cut(s) 77, 159
TasI AATT 5 cut(s) 306, 523, 566, 642, 692
TauI GCSGC 3 cut(s) 18, 182, 682
TfiI GAWTC 7 cut(s) 116, 275, 610, 631, 652, 672, 784
Tru1I TTAA 1 cut(s) 780
Tru9I TTAA 1 cut(s) 780
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 5 cut(s) 200, 254, 332, 698, 767
Tsp45I GTSAC 1 cut(s) 623
TspGWI ACGGA 2 cut(s) 303, 407
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 2 cut(s) 523, 566
XceI RCATGY 1 cut(s) 841
XcmI CCANNNNNNNNNTGG 2 cut(s) 27, 214
XspI CTAG 3 cut(s) 113, 296, 749
ZraI GACGTC 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.