Rh1CG288500

Anaphase-promoting complex subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
56127635 .. 56129488
1854 bp
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UTR
Exon/CDS
Intron
Rh1CG288500.1

Sequence Viewer

Length: 168 bp
ATGGCTATTGTCTTTGACAAACTGGGAAGACTAGAGGACAGAGAAGAGGCTGCAGCTTCATTTAAGATCACATTTTGGCCCTTTGAGAACCCTCAAGATGAGGAAGATCCTCTGATCGACATGTTTAGAAGGACAACATTGATGCAGGCAGCTAAGACAGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.42

Weight (kDa)

4.73

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031229)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002848.1_g000017
rosa_samantha Rh1CG288500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 120
AluBI AGCT 2 cut(s) 56, 152
AluI AGCT 2 cut(s) 56, 152
AlwI GGATC 1 cut(s) 101
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 50, 53, 149
AspS9I GGNCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 37, 65, 161
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 3 cut(s) 51, 54, 150
BlsI GCNGC 3 cut(s) 52, 55, 151
BmgT120I GGNCC 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 37, 65, 161
BshFI GGCC 1 cut(s) 79
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 66, 106, 114
BspANI GGCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 27
BssMI GATC 3 cut(s) 66, 106, 114
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 153
BstKTI GATC 3 cut(s) 69, 109, 117
BstMBI GATC 3 cut(s) 66, 106, 114
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 37, 65, 161
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 78
CviAII CATG 1 cut(s) 121
CviJI RGCY 5 cut(s) 5, 50, 56, 79, 152
CviKI_1 RGCY 5 cut(s) 5, 50, 56, 79, 152
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 68, 108, 116
DpnII GATC 3 cut(s) 66, 106, 114
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 51, 54, 150
Fsp4HI GCNGC 3 cut(s) 51, 54, 150
FspBI CTAG 1 cut(s) 32
GluI GCNGC 3 cut(s) 51, 54, 150
HaeIII GGCC 1 cut(s) 79
Hin1II CATG 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 53, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 3 cut(s) 66, 106, 114
LpnPI CCDG 2 cut(s) 8, 131
Lsp1109I GCAGC 3 cut(s) 37, 65, 161
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 32
MalI GATC 3 cut(s) 68, 108, 116
MboI GATC 3 cut(s) 66, 106, 114
MboII GAAGA 3 cut(s) 39, 56, 116
MflI RGATCY 1 cut(s) 106
MnlI CCTC 5 cut(s) 28, 40, 94, 102, 120
MseI TTAA 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 3 cut(s) 66, 106, 114
NlaIII CATG 1 cut(s) 124
NspI RCATGY 1 cut(s) 124
PciI ACATGT 1 cut(s) 120
PkrI GCNGC 3 cut(s) 52, 55, 151
PscI ACATGT 1 cut(s) 120
PspPI GGNCC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 106
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 3 cut(s) 51, 54, 150
Sau3AI GATC 3 cut(s) 66, 106, 114
Sau96I GGNCC 1 cut(s) 78
SetI ASST 2 cut(s) 58, 154
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 51
SgeI CNNG 5 cut(s) 35, 44, 107, 133, 158
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SspMI CTAG 1 cut(s) 32
TaqI TCGA 1 cut(s) 117
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 3 cut(s) 50, 53, 149
TspDTI ATGAA 1 cut(s) 48
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.