Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002868.1

Orthogroup ID

OG0025545

Physical Location & Seq

Genomic Coordinates Reverse (-)

66435 .. 66811

Gene Structure 377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgcaatttctgctaggccttgctgctgcagcaagtgttcaagtgagtaatgagctatgtggttgtcctccaaaggtggccaaatgggtgtttgtagtgaacgggaccagcatcatgattagcatagtgttcaatgctattctgctgatattcgaagttggattgagcaagctatttacaagtgaccaccaggttattgatgcagtggagatgacccccttgctagccatatctattttcttgaatggtattcaacctatactctcaggtattgacagtacatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

95

Amino Acids

10.09

Weight (kDa)

4.58

Isoelectric Point (pI)

8.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	3 - 91	6.6e-06	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0025545)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002868.1_g000025 Rmu_sc0009499.1_g000006
rosa_roxburghii	Rroxscaffold_1G00073110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	78
AfaI	GTAC	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	41, 133, 244, 254
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	55, 172
AluI	AGCT	2 cut(s)	55, 172
AoxI	GGCC	2 cut(s)	16, 78
ApeKI	GCWGC	3 cut(s)	23, 26, 29
AspS9I	GGNCC	1 cut(s)	105
AsuII	TTCGAA	1 cut(s)	153
AsuNHI	GCTAGC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	10, 13, 41
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	3 cut(s)	14, 224, 286
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	24, 27, 30
BlsI	GCNGC	3 cut(s)	25, 28, 31
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	120, 190
BmtI	GCTAGC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	279
BseXI	GCAGC	3 cut(s)	10, 13, 41
BshFI	GGCC	2 cut(s)	18, 80
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	18, 80
Bsp119I	TTCGAA	1 cut(s)	153
BspANI	GGCC	2 cut(s)	18, 80
BspCNI	CTCAG	1 cut(s)	278
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	170, 225
BstDEI	CTNAG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 29
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	10, 13, 41
BsuRI	GGCC	2 cut(s)	18, 80
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	170, 225
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	105
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	2 cut(s)	115, 282
CviJI	RGCY	5 cut(s)	18, 55, 80, 172, 227
CviKI_1	RGCY	5 cut(s)	18, 55, 80, 172, 227
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	118, 285
FaiI	YATR	6 cut(s)	58, 116, 125, 230, 260, 283
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	114, 281
Fnu4HI	GCNGC	3 cut(s)	24, 27, 30
Fsp4HI	GCNGC	3 cut(s)	24, 27, 30
FspBI	CTAG	3 cut(s)	14, 224, 286
GluI	GCNGC	3 cut(s)	24, 27, 30
HaeIII	GGCC	2 cut(s)	18, 80
Hin1II	CATG	2 cut(s)	118, 285
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	115, 241
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	4, 29, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 29
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	118, 285
LpnPI	CCDG	4 cut(s)	121, 176, 203, 252
Lsp1109I	GCAGC	3 cut(s)	10, 13, 41
LweI	GCATC	2 cut(s)	120, 190
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	3 cut(s)	14, 224, 286
MaeIII	GTNAC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	10, 29
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	2 cut(s)	118, 285
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	153
PagI	TCATGA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	25, 28, 31
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SatI	GCNGC	3 cut(s)	24, 27, 30
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	6 cut(s)	57, 78, 174, 195, 259, 271
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	120, 190
SfcI	CTRYAG	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	105
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	18
SspMI	CTAG	3 cut(s)	14, 224, 286
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	278
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	23, 26, 29
Tsp45I	GTSAC	1 cut(s)	182
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	105
XceI	RCATGY	1 cut(s)	285
XspI	CTAG	3 cut(s)	14, 224, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.