Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009499.1

Orthogroup ID

OG0025545

Physical Location & Seq

Genomic Coordinates Reverse (-)

53693 .. 57366

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009499.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaatagtgcaagaggtttggagttgaaaaccttcaaacaatcagtccaattttctgaaagacaaaattggaaaactggacctgtaaggaggccagcagcgtttccagcccaagcacatggaatcctagaatcctcaagagccgactatcagtgccaccaaaccctctatcaatctgcttcagtcctagtttcctcaggagccgactgtagtactacaaccacaacggttacggaaccagccaagcaaggtcggctcctgaggagactaggaccgaagcacattgacagagggttttgtggcactgacagttggctcctgaggattttgggactggaatgtggtcaccgtgttcaagtgagtaatgagctatgtggtggtcctccaaaggtggccaaatgggtgtttgtagtgaacgggaccagcatcatgattagcatagtgttcaatgctattctgctgatatttgaagttggattgagcaagctatttacaagtgaccaccaggttattgatgcagtggagatggcccccttgctagccatatctattttcttgaatggtattcaacctatactctcaggtattgacagtacatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

200

Amino Acids

21.8

Weight (kDa)

8.82

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025545)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002868.1_g000025 Rmu_sc0009499.1_g000006
rosa_roxburghii	Rroxscaffold_1G00073110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	2 cut(s)	214, 595
AgsI	TTSAA	7 cut(s)	28, 37, 356, 448, 470, 559, 569
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	2 cut(s)	370, 487
AluI	AGCT	2 cut(s)	370, 487
Alw26I	GTCTC	1 cut(s)	259
AoxI	GGCC	3 cut(s)	92, 393, 528
ApeKI	GCWGC	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	5 cut(s)	80, 272, 380, 420, 529
AsuHPI	GGTGA	1 cut(s)	338
AsuNHI	GCTAGC	1 cut(s)	538
AvaII	GGWCC	4 cut(s)	80, 272, 380, 420
AxyI	CCTNAGG	3 cut(s)	196, 260, 320
BalI	TGGCCA	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	5 cut(s)	128, 188, 269, 539, 601
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	4 cut(s)	80, 272, 380, 420
BmgT120I	GGNCC	5 cut(s)	80, 272, 380, 420, 529
BmiI	GGNNCC	6 cut(s)	202, 237, 257, 317, 421, 531
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	435, 505
BmtI	GCTAGC	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	82, 339
Bse21I	CCTNAGG	3 cut(s)	196, 260, 320
BseBI	CCWGG	1 cut(s)	506
BseMII	CTCAG	4 cut(s)	210, 251, 311, 594
BseNI	ACTGG	2 cut(s)	82, 339
BseRI	GAGGAG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	3 cut(s)	94, 395, 530
BslFI	GGGAC	2 cut(s)	345, 433
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	345, 433
BsnI	GGCC	3 cut(s)	94, 395, 530
BspANI	GGCC	3 cut(s)	94, 395, 530
BspCNI	CTCAG	4 cut(s)	209, 252, 312, 593
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	6 cut(s)	202, 237, 257, 317, 421, 531
BspOI	GCTAGC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	82, 339
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	5 cut(s)	209, 229, 311, 350, 593
BstC8I	GCNNGC	3 cut(s)	96, 485, 540
BstDEI	CTNAG	4 cut(s)	196, 260, 320, 580
BstEII	GGTNACC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 253
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	600
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	119
Bsu36I	CCTNAGG	3 cut(s)	196, 260, 320
BsuRI	GGCC	3 cut(s)	94, 395, 530
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	3 cut(s)	158, 303, 525
Cac8I	GCNNGC	3 cut(s)	96, 485, 540
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	5 cut(s)	80, 272, 380, 420, 529
CsiI	ACCWGGT	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	213, 594
CviAII	CATG	3 cut(s)	119, 430, 597
CviQI	GTAC	2 cut(s)	213, 594
DdeI	CTNAG	4 cut(s)	196, 260, 320, 580
EaeI	YGGCCR	1 cut(s)	393
Eco47I	GGWCC	4 cut(s)	80, 272, 380, 420
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	3 cut(s)	196, 260, 320
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	122, 433, 600
FaiI	YATR	7 cut(s)	120, 373, 431, 440, 545, 575, 598
FaqI	GGGAC	2 cut(s)	345, 433
FatI	CATG	3 cut(s)	118, 429, 596
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	5 cut(s)	128, 188, 269, 539, 601
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	94, 395, 530
Hin1II	CATG	3 cut(s)	122, 433, 600
HinfI	GANTC	2 cut(s)	123, 131
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	6 cut(s)	138, 198, 259, 319, 430, 556
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	5 cut(s)	209, 229, 311, 350, 593
HpyCH4V	TGCA	2 cut(s)	11, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 253
HpyF3I	CTNAG	4 cut(s)	196, 260, 320, 580
Hsp92II	CATG	3 cut(s)	122, 433, 600
LmnI	GCTCC	3 cut(s)	200, 261, 321
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	435, 505
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	5 cut(s)	128, 188, 269, 539, 601
MaeIII	GTNAC	3 cut(s)	229, 344, 497
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	2 cut(s)	50, 67
MluNI	TGGCCA	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	9 cut(s)	8, 84, 145, 176, 205, 255, 284, 315, 393
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	107, 253
NheI	GCTAGC	1 cut(s)	538
NlaIII	CATG	3 cut(s)	122, 433, 600
NlaIV	GGNNCC	6 cut(s)	202, 237, 257, 317, 421, 531
NmuCI	GTSAC	2 cut(s)	344, 497
NspI	RCATGY	1 cut(s)	600
PagI	TCATGA	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	123, 131
PkrI	GCNGC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	504
PspEI	GGTNACC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	6 cut(s)	202, 237, 257, 317, 421, 531
PspPI	GGNCC	5 cut(s)	80, 272, 380, 420, 529
RsaI	GTAC	2 cut(s)	214, 595
RsaNI	GTAC	2 cut(s)	213, 594
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	5 cut(s)	80, 272, 380, 420, 529
ScaI	AGTACT	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	506
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	435, 505
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	4 cut(s)	80, 272, 380, 420
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	50, 67
SspMI	CTAG	5 cut(s)	128, 188, 269, 539, 601
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	5 cut(s)	209, 229, 311, 350, 593
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	2 cut(s)	50, 67
TatI	WGTACW	2 cut(s)	212, 593
TfiI	GAWTC	2 cut(s)	123, 131
TscAI	CASTG	3 cut(s)	158, 310, 525
TseFI	GTSAC	2 cut(s)	344, 497
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	344, 497
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	3 cut(s)	158, 310, 525
VpaK11BI	GGWCC	4 cut(s)	80, 272, 380, 420
XceI	RCATGY	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	5 cut(s)	128, 188, 269, 539, 601
ZrmI	AGTACT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.