Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0025545

Physical Location & Seq

Genomic Coordinates Forward (+)

94105765 .. 94108737

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCAATTTCTGCTAGGCCTTGCTACTGCAGCAAGTATTCAAGTGAGTAATGAGCTATGTGGTGGTCCTCCAAAGGTGGCCAAATGGGTGTTTGTAGTGAACGGGACCAGCATCCTGATTAGCATAGTGTTCAGTGCTATTATGTTGATATTGGAAGTCGGATTGAGCAAGCTATTTACAAGTGACCACCAGGTTATTGATGCAGTGGAGATGGCCCCCTTGCTAGCCATATCTATTTTCTTGAATGATTCTCTCATGTTCACAATGGTACCCTATTCTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006725 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009698 GO:0009699 GO:0009705 GO:0009791 GO:0009987 GO:0010023 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0015075 GO:0015077 GO:0015078 GO:0015238 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015672 GO:0015893 GO:0016020 GO:0017144 GO:0018130 GO:0018958 GO:0019438 GO:0019748 GO:0021700 GO:0022414 GO:0022611 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046189 GO:0046483 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071695 GO:0071704 GO:0097437 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

95

Amino Acids

10.19

Weight (kDa)

4.95

Isoelectric Point (pI)

14.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025545)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002868.1_g000025 Rmu_sc0009499.1_g000006
rosa_roxburghii	Rroxscaffold_1G00073110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	78
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	41, 244
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	55, 172
AluI	AGCT	2 cut(s)	55, 172
AoxI	GGCC	3 cut(s)	16, 78, 213
ApeKI	GCWGC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	65, 105, 214
AsuNHI	GCTAGC	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	65, 105
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	2 cut(s)	14, 224
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	65, 105
BmgT120I	GGNCC	3 cut(s)	65, 105, 214
BmiI	GGNNCC	3 cut(s)	106, 216, 270
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	120, 190
BmtI	GCTAGC	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	3 cut(s)	18, 80, 215
BshNI	GGYRCC	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	18, 80, 215
BspANI	GGCC	3 cut(s)	18, 80, 215
BspLI	GGNNCC	3 cut(s)	106, 216, 270
BspMAI	CTGCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	170, 225
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 29
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	18, 80, 215
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	139, 210
Cac8I	GCNNGC	2 cut(s)	170, 225
Cfr13I	GGNCC	3 cut(s)	65, 105, 214
CsiI	ACCWGGT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	18, 55, 80, 172, 215, 227
CviKI_1	RGCY	6 cut(s)	18, 55, 80, 172, 215, 227
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	65, 105
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	1 cut(s)	259
FaiI	YATR	5 cut(s)	58, 125, 143, 230, 257
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	14, 224
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	18, 80, 215
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	100, 261
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	2 cut(s)	115, 241
Hpy8I	GTNNAC	2 cut(s)	100, 261
HpyCH4V	TGCA	3 cut(s)	4, 29, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 29
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	259
KpnI	GGTACC	1 cut(s)	272
LpnPI	CCDG	4 cut(s)	121, 128, 176, 203
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	120, 190
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	2 cut(s)	14, 224
MaeIII	GTNAC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	10, 29
NheI	GCTAGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	106, 216, 270
NmuCI	GTSAC	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	106, 216, 270
PspPI	GGNCC	3 cut(s)	65, 105, 214
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	3 cut(s)	65, 105, 214
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	4 cut(s)	57, 78, 174, 195
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	2 cut(s)	120, 190
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	65, 105
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	14, 224
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	189
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	248
TscAI	CASTG	2 cut(s)	139, 210
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	182
TspRI	CASTG	2 cut(s)	139, 210
VpaK11BI	GGWCC	2 cut(s)	65, 105
XspI	CTAG	2 cut(s)	14, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.