Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002897.1

Orthogroup ID

OG0025546

Physical Location & Seq

Genomic Coordinates Reverse (-)

42476 .. 42781

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002897.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgactgattatcccgctctcgctcccgctcccgctcctacaagcactcctccgatgatcagcactaccacgtctcctcctcctacaatgactggttatgtcctggatcccactcctacaagcacgccggtcggggttatagtaggagtggcgataggagggttcagtgtacttgttgtaatggtcattatcttctttatctatcggagacggaagaacaggttagcgagagctaatgagtcagggcaacaacccaaaagtaattcaaaacttataggcagaaatcttgaagttcttgcatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

101

Amino Acids

10.77

Weight (kDa)

10.11

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025546)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002897.1_g000007
rosa_samantha	Rh2AG400700 Rh2CG387000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	17, 29, 35
AciI	CCGC	3 cut(s)	15, 27, 33
AclWI	GGATC	2 cut(s)	101, 114
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	267, 290
AjiI	CACGTC	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	78, 202
AlwI	GGATC	2 cut(s)	101, 114
BamHI	GGATCC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	78, 202
Bme1390I	CCNGG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 58, 61, 61, 88, 91
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	3 cut(s)	39, 66, 69
Bsh1285I	CGRYCG	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	78, 202
BsmBI	CGTCTC	2 cut(s)	78, 202
Bsp143I	GATC	2 cut(s)	57, 106
BspACI	CCGC	3 cut(s)	15, 27, 33
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	101, 114
BsrBI	CCGCTC	3 cut(s)	17, 29, 35
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	127
BssMI	GATC	2 cut(s)	57, 106
Bst2UI	CCWGG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	60, 109
BstMAI	GTCTC	2 cut(s)	78, 202
BstMBI	GATC	2 cut(s)	57, 106
BstMCI	CGRYCG	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	170
CviJI	RGCY	1 cut(s)	233
CviKI_1	RGCY	1 cut(s)	233
CviQI	GTAC	1 cut(s)	170
DpnI	GATC	2 cut(s)	59, 108
DpnII	GATC	2 cut(s)	57, 106
EcoRII	CCWGG	1 cut(s)	102
Esp3I	CGTCTC	2 cut(s)	78, 202
FaiI	YATR	4 cut(s)	99, 140, 275, 301
FauI	CCCGC	3 cut(s)	22, 34, 40
FbaI	TGATCA	1 cut(s)	57
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	54, 207
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	57, 106
LmnI	GCTCC	3 cut(s)	28, 34, 40
LpnPI	CCDG	6 cut(s)	78, 89, 116, 141, 205, 228
MaeII	ACGT	1 cut(s)	71
MalI	GATC	2 cut(s)	59, 108
MbiI	CCGCTC	3 cut(s)	17, 29, 35
MboI	GATC	2 cut(s)	57, 106
MboII	GAAGA	2 cut(s)	184, 226
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	60, 87, 90, 152
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	2 cut(s)	57, 106
NlaIV	GGNNCC	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	102
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	57, 106
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	3 cut(s)	74, 224, 235
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	3 cut(s)	15, 27, 33
StyD4I	CCNGG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	74
TasI	AATT	1 cut(s)	262
TatI	WGTACW	1 cut(s)	169
TscAI	CASTG	1 cut(s)	172
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.