Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002925.1

Orthogroup ID

OG0019347

Physical Location & Seq

Genomic Coordinates Forward (+)

12 .. 1135

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atggtacctcaaggagagttaaacgagttaccccacccctctccctctgtcattcttagatcttggaagccaacatgttggccggagacatggagaggttgtacctatctgactcttacgaaggagtcgaagacgatgaagatggcatggagtctgacactgaatcttttgacaaagtcgaagacagtcatggaggcgcccgtgcacacattagagagtcttgattccgacgaggccattattgcaaggctcaacaagtttgctgcttctccctcccaactaccaagccagatctcgtgtgatggcacctcctttggtactatctatgggaggcttgatttcgtatatgatgggatggagatgaattgtcggacatctagggttaccatcccccacgaccttaatatggttagtgaaataaatagtgatgcattgttcatcttgttgattgaccaatcctctaatgcttatatactggaaagagagctggctcggtttgcagcgccctttccatgcatcattgtgtttatcaatcaagtacatggacagcctgctaacactacggggcttttcttgatggagatgaagatgaagatgaagtttcctaacgtaccgatgctggctcttgttaatgctagtccagaaggagtgaagatgttactttcactcgagggacttgatgtcaagtggctaggaatcagaagggacgattttgccaaatataaaataactatcaatgtcgacacgccactgactgaagttgacatcaagttattggcgagacatctcttggagaaagaacgtgtccaaaagaatccggtattgcgtgatgagctgaatcacatggtagccacggagagtatggtagaatctgatgctgtgctagcggcgagacatctcttggagaaagaacgtatccaaaagaatccggtattgcgtgatgagctgaatcacatggtagccacggagagtatggtagaatctgatgctgtgctagctttgggggcacccttcttgtatcaggtttctttaccactcaaactccagtatatggattggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

354

Amino Acids

40.03

Weight (kDa)

5.69

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	164 - 295	1.8e-09	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0363151
rosa_laevigata	RLG00000027588
rosa_multiflora	Rmu_sc0002925.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293410
rosa_rugosa	Rorug01G0305100.1
rosa_samantha	Rh1AG313800 Rh1BG277300 Rh1DG308000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	4 cut(s)	4, 196, 305, 1006
AccB7I	CCANNNNNTGG	1 cut(s)	1051
AccI	GTMKAC	1 cut(s)	741
AciI	CCGC	1 cut(s)	887
AcoI	YGGCCR	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	777
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	5 cut(s)	6, 103, 319, 540, 612
AfiI	CCNNNNNNNGG	2 cut(s)	406, 1051
AflIII	ACRYGT	2 cut(s)	74, 802
AhdI	GACNNNNNGTC	1 cut(s)	680
AluBI	AGCT	4 cut(s)	487, 835, 946, 998
AluI	AGCT	4 cut(s)	487, 835, 946, 998
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	3 cut(s)	80, 775, 886
Alw44I	GTGCAC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	668
AoxI	GGCC	2 cut(s)	80, 234
ApaLI	GTGCAC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	263, 500
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	199, 505
AsuNHI	GCTAGC	2 cut(s)	883, 994
AvaI	CYCGRG	1 cut(s)	668
BaeGI	GKGCMC	2 cut(s)	207, 1009
BanI	GGYRCC	4 cut(s)	4, 196, 305, 1006
BauI	CACGAG	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	137, 188
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	250, 512
BccI	CCATC	6 cut(s)	136, 296, 344, 349, 395, 571
BciVI	GTATCC	1 cut(s)	926
BcoDI	GTCTC	3 cut(s)	80, 775, 886
BfaI	CTAG	5 cut(s)	378, 636, 692, 884, 995
BfoI	RGCGCY	2 cut(s)	200, 506
BfuI	GTATCC	1 cut(s)	926
BglII	AGATCT	2 cut(s)	59, 291
BisI	GCNGC	3 cut(s)	264, 501, 888
BlsI	GCNGC	3 cut(s)	265, 502, 889
BmeRI	GACNNNNNGTC	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	668
BmiI	GGNNCC	4 cut(s)	6, 198, 307, 1008
BmsI	GCATC	5 cut(s)	418, 525, 606, 865, 976
BmtI	GCTAGC	2 cut(s)	887, 998
BpiI	GAAGAC	2 cut(s)	137, 188
BpmI	CTGGAG	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	852, 963
BsaWI	WCCGGW	2 cut(s)	817, 928
BsaXI	ACNNNNNCTCC	4 cut(s)	85, 115, 1026, 1056
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 1051
Bse1I	ACTGG	2 cut(s)	480, 1045
BseDI	CCNNGG	2 cut(s)	852, 963
BseGI	GGATG	2 cut(s)	360, 387
BseLI	CCNNNNNNNGG	2 cut(s)	406, 1051
BseNI	ACTGG	2 cut(s)	480, 1045
BseSI	GKGCMC	2 cut(s)	207, 1009
BseXI	GCAGC	2 cut(s)	250, 512
BshFI	GGCC	2 cut(s)	82, 236
BshNI	GGYRCC	4 cut(s)	4, 196, 305, 1006
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	3 cut(s)	83, 818, 929
BslFI	GGGAC	2 cut(s)	687, 719
BslI	CCNNNNNNNGG	2 cut(s)	406, 1051
BsmAI	GTCTC	3 cut(s)	80, 775, 886
BsmFI	GGGAC	2 cut(s)	687, 719
BsnI	GGCC	2 cut(s)	82, 236
BsoBI	CYCGRG	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	207, 1009
Bsp143I	GATC	2 cut(s)	59, 291
BspACI	CCGC	1 cut(s)	887
BspANI	GGCC	2 cut(s)	82, 236
BspLI	GGNNCC	4 cut(s)	6, 198, 307, 1008
BspOI	GCTAGC	2 cut(s)	887, 998
BspT107I	GGYRCC	4 cut(s)	4, 196, 305, 1006
BsrI	ACTGG	2 cut(s)	480, 1045
BssECI	CCNNGG	2 cut(s)	852, 963
BssMI	GATC	2 cut(s)	59, 291
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	295
Bst2BI	CACGAG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	5 cut(s)	489, 552, 621, 885, 996
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	2 cut(s)	852, 963
BstEII	GGTNACC	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	360, 387
BstH2I	RGCGCY	2 cut(s)	200, 506
BstHHI	GCGC	2 cut(s)	199, 505
BstKTI	GATC	2 cut(s)	62, 294
BstMAI	GTCTC	3 cut(s)	80, 775, 886
BstMBI	GATC	2 cut(s)	59, 291
BstMWI	GCNNNNNNNGC	7 cut(s)	242, 497, 832, 884, 943, 995, 1004
BstNSI	RCATGY	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	382
BstSLI	GKGCMC	2 cut(s)	207, 1009
BstV1I	GCAGC	2 cut(s)	250, 512
BstV2I	GAAGAC	2 cut(s)	137, 188
BstX2I	RGATCY	2 cut(s)	59, 291
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	2 cut(s)	59, 291
BsuI	GTATCC	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	82, 236
BtgI	CCRYGG	2 cut(s)	852, 963
BtsCI	GGATG	2 cut(s)	360, 387
BtsIMutI	CAGTG	2 cut(s)	158, 749
Cac8I	GCNNGC	5 cut(s)	489, 552, 621, 885, 996
CfoI	GCGC	2 cut(s)	199, 505
Csp6I	GTAC	5 cut(s)	5, 102, 318, 539, 611
CviAII	CATG	8 cut(s)	75, 90, 147, 190, 513, 542, 844, 955
CviQI	GTAC	5 cut(s)	5, 102, 318, 539, 611
DdeI	CTNAG	1 cut(s)	56
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	2 cut(s)	61, 293
DpnII	GATC	2 cut(s)	59, 291
DriI	GACNNNNNGTC	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	668
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoT22I	ATGCAT	2 cut(s)	433, 518
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaeI	CATG	8 cut(s)	78, 93, 150, 193, 516, 545, 847, 958
FaqI	GGGAC	2 cut(s)	687, 719
FatI	CATG	8 cut(s)	74, 89, 146, 189, 512, 541, 843, 954
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	3 cut(s)	264, 501, 888
FokI	GGATG	2 cut(s)	367, 374
Fsp4HI	GCNGC	3 cut(s)	264, 501, 888
FspBI	CTAG	5 cut(s)	378, 636, 692, 884, 995
GlaI	GCGC	2 cut(s)	198, 504
GluI	GCNGC	3 cut(s)	264, 501, 888
GsuI	CTGGAG	1 cut(s)	1028
HaeII	RGCGCY	2 cut(s)	200, 506
HaeIII	GGCC	2 cut(s)	82, 236
HapII	CCGG	3 cut(s)	83, 818, 929
HhaI	GCGC	2 cut(s)	199, 505
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	8 cut(s)	78, 93, 150, 193, 516, 545, 847, 958
Hin6I	GCGC	2 cut(s)	197, 503
HinP1I	GCGC	2 cut(s)	197, 503
HincII	GTYRAC	2 cut(s)	742, 763
HindII	GTYRAC	2 cut(s)	742, 763
HpaII	CCGG	3 cut(s)	83, 818, 929
Hpy166II	GTNNAC	3 cut(s)	205, 742, 763
Hpy188I	TCNGA	7 cut(s)	111, 156, 229, 372, 701, 874, 985
Hpy188III	TCNNGA	3 cut(s)	221, 574, 641
Hpy8I	GTNNAC	3 cut(s)	205, 742, 763
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	115, 638, 696, 1021
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	3 cut(s)	609, 802, 913
HpyCH4V	TGCA	5 cut(s)	205, 245, 431, 500, 516
HpyF10VI	GCNNNNNNNGC	7 cut(s)	242, 497, 832, 884, 943, 995, 1004
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	3 cut(s)	609, 802, 913
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	8 cut(s)	78, 93, 150, 193, 516, 545, 847, 958
HspAI	GCGC	2 cut(s)	197, 503
KasI	GGCGCC	1 cut(s)	196
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	59, 291
Lsp1109I	GCAGC	2 cut(s)	250, 512
LweI	GCATC	5 cut(s)	418, 525, 606, 865, 976
MaeI	CTAG	5 cut(s)	378, 636, 692, 884, 995
MaeII	ACGT	3 cut(s)	609, 802, 913
MaeIII	GTNAC	3 cut(s)	27, 382, 657
MalI	GATC	2 cut(s)	61, 293
MboI	GATC	2 cut(s)	59, 291
MboII	GAAGA	6 cut(s)	142, 151, 193, 598, 604, 664
MflI	RGATCY	2 cut(s)	59, 291
MhlI	GDGCHC	2 cut(s)	207, 1009
MluCI	AATT	1 cut(s)	364
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	4 cut(s)	106, 134, 160, 226
MmeI	TCCRAC	2 cut(s)	252, 350
Mph1103I	ATGCAT	2 cut(s)	433, 518
MseI	TTAA	3 cut(s)	20, 402, 630
MslI	CAYNNNNRTG	1 cut(s)	521
MspI	CCGG	3 cut(s)	83, 818, 929
MwoI	GCNNNNNNNGC	7 cut(s)	242, 497, 832, 884, 943, 995, 1004
NarI	GGCGCC	1 cut(s)	197
NdeII	GATC	2 cut(s)	59, 291
NheI	GCTAGC	2 cut(s)	883, 994
NlaIII	CATG	8 cut(s)	78, 93, 150, 193, 516, 545, 847, 958
NlaIV	GGNNCC	4 cut(s)	6, 198, 307, 1008
NsiI	ATGCAT	2 cut(s)	433, 518
NspI	RCATGY	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	668
PciI	ACATGT	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	9 cut(s)	163, 224, 696, 814, 838, 869, 925, 949, 980
PflFI	GACNNNGTC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	1051
PkrI	GCNGC	3 cut(s)	265, 502, 889
PleI	GAGTC	4 cut(s)	106, 133, 159, 225
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	4 cut(s)	106, 133, 159, 225
PscI	ACATGT	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	6, 198, 307, 1008
PspXI	VCTCGAGB	1 cut(s)	668
PsuI	RGATCY	2 cut(s)	59, 291
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	5 cut(s)	6, 103, 319, 540, 612
RsaNI	GTAC	5 cut(s)	5, 102, 318, 539, 611
RseI	CAYNNNNRTG	1 cut(s)	521
SalI	GTCGAC	1 cut(s)	740
SaqAI	TTAA	3 cut(s)	20, 402, 630
SatI	GCNGC	3 cut(s)	264, 501, 888
Sau3AI	GATC	2 cut(s)	59, 291
SchI	GAGTC	4 cut(s)	106, 134, 160, 226
SduI	GDGCHC	2 cut(s)	207, 1009
SfaNI	GCATC	5 cut(s)	418, 525, 606, 865, 976
SfoI	GGCGCC	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	668
SlaI	CTCGAG	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	9, 668
SmoI	CTYRAG	2 cut(s)	9, 668
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	887
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	5 cut(s)	378, 636, 692, 884, 995
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	3 cut(s)	612, 805, 916
TaqI	TCGA	4 cut(s)	128, 179, 669, 741
TasI	AATT	1 cut(s)	364
TatI	WGTACW	1 cut(s)	538
TauI	GCSGC	1 cut(s)	890
TfiI	GAWTC	9 cut(s)	163, 224, 696, 814, 838, 869, 925, 949, 980
Tru1I	TTAA	3 cut(s)	20, 402, 630
Tru9I	TTAA	3 cut(s)	20, 402, 630
TscAI	CASTG	2 cut(s)	165, 756
TseI	GCWGC	2 cut(s)	263, 500
TspDTI	ATGAA	6 cut(s)	152, 377, 427, 599, 605, 611
TspGWI	ACGGA	2 cut(s)	869, 980
TspRI	CASTG	2 cut(s)	165, 756
Tth111I	GACNNNGTC	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	1051
VneI	GTGCAC	1 cut(s)	203
XceI	RCATGY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	2 cut(s)	859, 970
XhoI	CTCGAG	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	5 cut(s)	378, 636, 692, 884, 995
Zsp2I	ATGCAT	2 cut(s)	433, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.