Rmu_sc0003008.1_g000015

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003008.1
OG0022987
Physical Location & Seq
Reverse (-)
70838 .. 72148
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1311 bp
ctgaagtataggatctcagaggtggaaagatggtcagagaacttgagcatatatagagttcgaaataatgttcgaaaagtgaaggaggatgcctataaccctcgcctcgtctcaatcggactttatcacgaagacaaacatgaacttgaaggtattagagagcttaaagagcattatatgcaatgtttctttcggcgagcaaaggatagtcaggaatgcttggaagagtgcgctcttgctattaatggtttacagaaagatattcgtgcctgctacgatggaagcatcaaggacatgtcaaacaatgcggttgatgaaaaattgctccttgatggttgtttcttattggagcttttccttaggtatgaccaacacagcaacaataacaatatgagtccaggtgatcatgatccaatttttagtagtgcttggatcatcccagctcttcggcgtgatcttgcattactcgaaaaccagatccccttttttgttcttattaagctgcatgaaatatatttgacactgagggacatgcatcgtgactctataacaccaaaatcaaccatcggtcaccatgcacttgttttctttctacctatgcacacaaaagcaatacatgcagcatatgcagcgcggctgagtgaaaatgagtgcaagcatttgcttgatctcttgcacaaaatctatctcccagatttcttctctcccagcccaacccccatctctgtagagtcgactaccaaaggtggttatagtctaagcaatagaaactggggattcaatttttccacagcagaacttttagaggctgaaatcgagtttcaactacagcaggagtacttgccttacatgagttttgagaagggggtgattagaatccctccgttggtgatggatgagacaacaaattcaatgatgaggaatttaattgcttatgagcaatgtggtttcgtaaaaaattactttacttcatttgccatcgtcctgaaaagtttgatacgatcgttggaggatattaaactacttcggcaaagaaagatcataagttccacttggactgctgatgaagaatgtttgattcatttcaacactatgatggatgaagttgttgtgaaggaattttactttttccacttcttgtgcacaaaagtgaatgcgaaagccgaagagtttgggtttcgtagattcatgaagaacctttatcgcacttatttctcaacagcatggagtctgatatcactcattgctgcatcttgccttttcgttctcactgtcattcaaacatacttctccattcgccaaagtcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

436

Amino Acids

51.05

Weight (kDa)

6.6

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 17 - 423 4e-89 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022987)

Species Orthologous Gene IDs
rosa_laevigata RLG00000030593
rosa_multiflora Rmu_sc0003008.1_g000015
rosa_samantha Rh1DG018900
rosa_wichuraiana Rw1G001540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 734
AccII CGCG 1 cut(s) 634
AciI CCGC 2 cut(s) 308, 634
AclWI GGATC 4 cut(s) 20, 404, 440, 472
AcsI RAATTY 3 cut(s) 907, 922, 1118
AcuI CTGAAG 1 cut(s) 23
AfaI GTAC 1 cut(s) 839
AfiI CCNNNNNNNGG 1 cut(s) 886
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 6 cut(s) 149, 781, 824, 912, 1087, 1280
AjnI CCWGG 1 cut(s) 397
AleI CACNNNNGTG 1 cut(s) 1148
AluBI AGCT 4 cut(s) 163, 352, 443, 502
AluI AGCT 4 cut(s) 163, 352, 443, 502
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 2 cut(s) 115, 893
Alw44I GTGCAC 1 cut(s) 1141
AlwI GGATC 4 cut(s) 20, 404, 440, 472
ApaLI GTGCAC 1 cut(s) 1141
ApeKI GCWGC 4 cut(s) 502, 620, 629, 1247
ApoI RAATTY 3 cut(s) 907, 922, 1118
AseI ATTAAT 1 cut(s) 243
AspLEI GCGC 2 cut(s) 233, 634
AsuHPI GGTGA 4 cut(s) 413, 563, 880, 901
AsuII TTCGAA 2 cut(s) 61, 73
AxyI CCTNAGG 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 1145
BaeI ACNNNNGTAYC 2 cut(s) 989, 1022
BarI GAAGNNNNNNTAC 2 cut(s) 1106, 1138
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 1145
BbvI GCAGC 4 cut(s) 489, 632, 641, 1234
BccI CCATC 8 cut(s) 24, 272, 326, 572, 728, 886, 986, 1090
BciT130I CCWGG 1 cut(s) 399
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 115, 893
BfmI CTRYAG 2 cut(s) 726, 827
BisI GCNGC 5 cut(s) 503, 621, 630, 635, 1248
BlsI GCNGC 5 cut(s) 504, 622, 631, 636, 1249
BmcAI AGTACT 1 cut(s) 839
Bme1390I CCNGG 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 4 cut(s) 79, 294, 544, 1259
BmuI ACTGGG 1 cut(s) 781
BpiI GAAGAC 1 cut(s) 138
Bpu14I TTCGAA 2 cut(s) 61, 73
BpuEI CTTGAG 1 cut(s) 64
BsaBI GATNNNNATC 2 cut(s) 408, 875
Bsc4I CCNNNNNNNGG 1 cut(s) 886
Bse1I ACTGG 1 cut(s) 776
Bse21I CCTNAGG 1 cut(s) 359
Bse3DI GCAATG 3 cut(s) 188, 947, 1242
Bse8I GATNNNNATC 2 cut(s) 408, 875
BseBI CCWGG 1 cut(s) 399
BseGI GGATG 4 cut(s) 94, 435, 901, 1105
BseJI GATNNNNATC 2 cut(s) 408, 875
BseLI CCNNNNNNNGG 1 cut(s) 886
BseMI GCAATG 3 cut(s) 188, 947, 1242
BseMII CTCAG 3 cut(s) 30, 515, 629
BseNI ACTGG 1 cut(s) 776
BseSI GKGCMC 1 cut(s) 1145
BseXI GCAGC 4 cut(s) 489, 632, 641, 1234
BseYI CCCAGC 2 cut(s) 439, 707
Bsh1236I CGCG 1 cut(s) 634
Bsh1285I CGRYCG 1 cut(s) 1004
BsiEI CGRYCG 1 cut(s) 1004
BsiHKAI GWGCWC 1 cut(s) 1145
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 1 cut(s) 886
BsmAI GTCTC 2 cut(s) 115, 893
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 2 cut(s) 221, 1159
Bsp119I TTCGAA 2 cut(s) 61, 73
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp143I GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
BspACI CCGC 2 cut(s) 308, 634
BspCNI CTCAG 3 cut(s) 29, 516, 630
BspFNI CGCG 1 cut(s) 634
BspHI TCATGA 2 cut(s) 406, 1188
BspPI GGATC 4 cut(s) 20, 404, 440, 472
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 2 cut(s) 61, 73
BsrDI GCAATG 3 cut(s) 188, 947, 1242
BsrI ACTGG 1 cut(s) 776
BssMI GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 1273
Bst6I CTCTTC 3 cut(s) 219, 450, 1161
BstAPI GCANNNNNTGC 3 cut(s) 178, 617, 626
BstBI TTCGAA 2 cut(s) 61, 73
BstC8I GCNNGC 3 cut(s) 198, 271, 656
BstDEI CTNAG 5 cut(s) 16, 359, 524, 638, 758
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 4 cut(s) 94, 435, 901, 1105
BstFNI CGCG 1 cut(s) 634
BstHHI GCGC 2 cut(s) 233, 634
BstKTI GATC 9 cut(s) 15, 406, 412, 435, 457, 480, 670, 1004, 1041
BstMAI GTCTC 2 cut(s) 115, 893
BstMBI GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
BstMCI CGRYCG 1 cut(s) 1004
BstMWI GCNNNNNNNGC 6 cut(s) 169, 178, 617, 626, 629, 1305
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 3 cut(s) 298, 535, 620
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 726, 827
BstSLI GKGCMC 1 cut(s) 1145
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 4 cut(s) 489, 632, 641, 1234
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 12, 477
BstYI RGATCY 2 cut(s) 12, 477
Bsu36I CCTNAGG 1 cut(s) 359
BtsCI GGATG 4 cut(s) 94, 435, 901, 1105
BtsIMutI CAGTG 2 cut(s) 521, 1269
Cac8I GCNNGC 3 cut(s) 198, 271, 656
CciI TCATGA 2 cut(s) 406, 1188
CfoI GCGC 2 cut(s) 233, 634
Csp6I GTAC 1 cut(s) 838
CviJI RGCY 8 cut(s) 163, 352, 443, 502, 637, 711, 809, 1163
CviKI_1 RGCY 8 cut(s) 163, 352, 443, 502, 637, 711, 809, 1163
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 5 cut(s) 16, 359, 524, 638, 758
DpnI GATC 9 cut(s) 14, 405, 411, 434, 456, 479, 669, 1003, 1040
DpnII GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
Eam1104I CTCTTC 3 cut(s) 219, 450, 1161
EarI CTCTTC 3 cut(s) 219, 450, 1161
Eco32I GATATC 1 cut(s) 1236
Eco57I CTGAAG 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 1236
EcoT22I ATGCAT 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 115
FalI AAGNNNNNCTT 2 cut(s) 1036, 1068
FaqI GGGAC 1 cut(s) 542
FauNDI CATATG 1 cut(s) 625
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 5 cut(s) 503, 621, 630, 635, 1248
FokI GGATG 4 cut(s) 101, 422, 908, 1112
Fsp4HI GCNGC 5 cut(s) 503, 621, 630, 635, 1248
GlaI GCGC 2 cut(s) 232, 633
GluI GCNGC 5 cut(s) 503, 621, 630, 635, 1248
GsaI CCCAGC 2 cut(s) 443, 711
HhaI GCGC 2 cut(s) 233, 634
Hin6I GCGC 2 cut(s) 231, 632
HinP1I GCGC 2 cut(s) 231, 632
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 8 cut(s) 394, 542, 731, 777, 876, 1078, 1185, 1228
HphI GGTGA 4 cut(s) 413, 563, 880, 901
Hpy166II GTNNAC 3 cut(s) 251, 735, 1143
Hpy188I TCNGA 4 cut(s) 19, 37, 119, 1233
Hpy188III TCNNGA 6 cut(s) 128, 212, 407, 539, 985, 1189
Hpy8I GTNNAC 3 cut(s) 251, 735, 1143
HpyAV CCTTC 4 cut(s) 76, 143, 856, 1108
HpyCH4III ACNGT 1 cut(s) 1273
HpyF10VI GCNNNNNNNGC 6 cut(s) 169, 178, 617, 626, 629, 1305
HpyF3I CTNAG 5 cut(s) 16, 359, 524, 638, 758
HspAI GCGC 2 cut(s) 231, 632
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 2 cut(s) 330, 349
Lsp1109I GCAGC 4 cut(s) 489, 632, 641, 1234
LweI GCATC 4 cut(s) 79, 294, 544, 1259
MaeIII GTNAC 2 cut(s) 539, 569
MalI GATC 9 cut(s) 14, 405, 411, 434, 456, 479, 669, 1003, 1040
MboI GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
MboII GAAGA 7 cut(s) 143, 236, 437, 691, 1079, 1178, 1204
MflI RGATCY 2 cut(s) 12, 477
MhlI GDGCHC 1 cut(s) 1145
MluCI AATT 8 cut(s) 320, 414, 781, 907, 922, 927, 958, 1118
MlyI GAGTC 4 cut(s) 403, 536, 740, 1237
MmeI TCCRAC 1 cut(s) 987
MnlI CCTC 9 cut(s) 13, 79, 111, 116, 519, 799, 891, 912, 1003
Mph1103I ATGCAT 1 cut(s) 537
MseI TTAA 5 cut(s) 165, 243, 498, 926, 1017
MslI CAYNNNNRTG 2 cut(s) 1094, 1148
MspR9I CCNGG 1 cut(s) 399
Mva1269I GAATGC 2 cut(s) 221, 1159
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 6 cut(s) 169, 178, 617, 626, 629, 1305
NdeI CATATG 1 cut(s) 625
NdeII GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
NmuCI GTSAC 2 cut(s) 539, 569
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 3 cut(s) 298, 535, 620
NspV TTCGAA 2 cut(s) 61, 73
OliI CACNNNNGTG 1 cut(s) 1148
PagI TCATGA 2 cut(s) 406, 1188
PciI ACATGT 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 450
PctI GAATGC 2 cut(s) 221, 1159
PfeI GAWTC 4 cut(s) 777, 876, 1078, 1185
PkrI GCNGC 5 cut(s) 504, 622, 631, 636, 1249
Ple19I CGATCG 1 cut(s) 1004
PleI GAGTC 4 cut(s) 402, 536, 739, 1236
PpsI GAGTC 4 cut(s) 402, 536, 739, 1236
PscI ACATGT 1 cut(s) 294
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 397
PspEI GGTNACC 1 cut(s) 569
PspFI CCCAGC 2 cut(s) 439, 707
PspGI CCWGG 1 cut(s) 397
PsuI RGATCY 2 cut(s) 12, 477
PvuI CGATCG 1 cut(s) 1004
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
RseI CAYNNNNRTG 2 cut(s) 1094, 1148
SalI GTCGAC 1 cut(s) 733
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 5 cut(s) 165, 243, 498, 926, 1017
SatI GCNGC 5 cut(s) 503, 621, 630, 635, 1248
Sau3AI GATC 9 cut(s) 12, 403, 409, 432, 454, 477, 667, 1001, 1038
ScaI AGTACT 1 cut(s) 839
SchI GAGTC 4 cut(s) 403, 536, 740, 1237
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 1145
SfaNI GCATC 4 cut(s) 79, 294, 544, 1259
SfcI CTRYAG 2 cut(s) 726, 827
SfuI TTCGAA 2 cut(s) 61, 73
SmiMI CAYNNNNRTG 2 cut(s) 1094, 1148
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 8 cut(s) 320, 414, 781, 907, 922, 927, 958, 1118
SsiI CCGC 2 cut(s) 308, 634
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 1273
TaqI TCGA 5 cut(s) 61, 73, 468, 734, 816
TaqII GACCGA 1 cut(s) 557
TasI AATT 8 cut(s) 320, 414, 781, 907, 922, 927, 958, 1118
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 637
TfiI GAWTC 4 cut(s) 777, 876, 1078, 1185
Tru1I TTAA 5 cut(s) 165, 243, 498, 926, 1017
Tru9I TTAA 5 cut(s) 165, 243, 498, 926, 1017
TscAI CASTG 2 cut(s) 528, 1276
TseFI GTSAC 2 cut(s) 539, 569
TseI GCWGC 4 cut(s) 502, 620, 629, 1247
Tsp45I GTSAC 2 cut(s) 539, 569
TspDTI ATGAA 9 cut(s) 156, 330, 522, 960, 1070, 1080, 1116, 1177, 1205
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 2 cut(s) 528, 1276
VneI GTGCAC 1 cut(s) 1141
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 3 cut(s) 907, 922, 1118
XceI RCATGY 3 cut(s) 298, 535, 620
XmiI GTMKAC 1 cut(s) 734
ZrmI AGTACT 1 cut(s) 839
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.