Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003012.1

Orthogroup ID

OG0023092

Physical Location & Seq

Genomic Coordinates Forward (+)

46020 .. 47214

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgccttcttctacttttagcggtgacgaaaccgctcccttcttcagctgcctcggttccgttgctactctcgtcttcttctgtgacgcctgtgacgaaacccatgcttctattttctgctctactgagagctatatgctgtgtcagaactgtgactgggatatgcacaatctttcgtcgtggatgatgcacgataggagaccgattgaggggtttattgggaatcctgggttgaacgagctactggcatttgtggtgtttgagaatttggataagaaaggtttggtttttagtgaggagagtagtggtagtggtggagggttttatggtctgggcttgatgggtcgttggtcaatccacactgccgcatctctgccttactctcagtcaatcctccattccataccttctttaccccacttcccatctctacccatcaacccagcaaagtcctcgtctccaaatccccactcgttgtttccagcccaaattggtccgcccagacccgccatttctaggtggcttttcccccctcctctgccgcatcgcgtcatcggagactcctctctatccgctcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

193

Amino Acids

20.99

Weight (kDa)

5.48

Isoelectric Point (pI)

82.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023092)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003012.1_g000011
rosa_samantha	Rh6AG082600 Rh6BG077300 Rh6CG071900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	35, 575
AccII	CGCG	1 cut(s)	549
AciI	CCGC	7 cut(s)	21, 33, 366, 497, 507, 542, 573
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	209, 516
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	48, 132, 241
AluI	AGCT	3 cut(s)	48, 132, 241
Alw26I	GTCTC	3 cut(s)	193, 462, 552
ApeKI	GCWGC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	3 cut(s)	334, 433, 443
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 435, 469
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	193, 462, 552
BfaI	CTAG	1 cut(s)	516
BisI	GCNGC	3 cut(s)	49, 366, 542
BlsI	GCNGC	3 cut(s)	50, 367, 543
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	228
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	177, 377, 553
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	52, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 516
Bse1I	ACTGG	2 cut(s)	161, 249
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	52, 227
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	209, 516
BseMII	CTCAG	2 cut(s)	117, 398
BseNI	ACTGG	2 cut(s)	161, 249
BseRI	GAGGAG	3 cut(s)	311, 525, 553
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	209, 516
BsmAI	GTCTC	3 cut(s)	193, 462, 552
BsmBI	CGTCTC	1 cut(s)	462
Bso31I	GGTCTC	1 cut(s)	193
BspACI	CCGC	7 cut(s)	21, 33, 366, 497, 507, 542, 573
BspCNI	CTCAG	2 cut(s)	118, 397
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	193
BsrBI	CCGCTC	2 cut(s)	35, 575
BsrI	ACTGG	2 cut(s)	161, 249
BssECI	CCNNGG	2 cut(s)	52, 227
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	126, 384
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	549
BstMAI	GTCTC	3 cut(s)	193, 462, 552
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	494
CseI	GACGC	2 cut(s)	95, 538
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	6 cut(s)	48, 132, 241, 336, 485, 523
CviKI_1	RGCY	6 cut(s)	48, 132, 241, 336, 485, 523
DdeI	CTNAG	2 cut(s)	126, 384
EciI	GGCGGA	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	1 cut(s)	107
FaiI	YATR	6 cut(s)	105, 135, 137, 164, 327, 404
FatI	CATG	1 cut(s)	103
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	49, 366, 542
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	3 cut(s)	49, 366, 542
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	3 cut(s)	49, 366, 542
GsaI	CCCAGC	1 cut(s)	446
HgaI	GACGC	2 cut(s)	95, 538
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	2 cut(s)	223, 560
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	147, 557
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	15, 49, 417
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	166, 190
HpyF3I	CTNAG	2 cut(s)	126, 384
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	9 cut(s)	103, 142, 213, 230, 240, 317, 456, 495, 514
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	3 cut(s)	177, 377, 553
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	4 cut(s)	23, 83, 92, 152
MbiI	CCGCTC	2 cut(s)	35, 575
MboII	GAAGA	3 cut(s)	34, 67, 70
MluCI	AATT	2 cut(s)	265, 489
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	9 cut(s)	62, 202, 289, 311, 404, 463, 543, 546, 574
MspA1I	CMGCKG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	549
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	4 cut(s)	23, 83, 92, 152
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	50, 367, 543
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	48
SatI	GCNGC	3 cut(s)	49, 366, 542
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	6 cut(s)	50, 134, 243, 283, 409, 521
SfaNI	GCATC	3 cut(s)	177, 377, 553
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	2 cut(s)	265, 489
SsiI	CCGC	7 cut(s)	21, 33, 366, 497, 507, 542, 573
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	265, 489
TauI	GCSGC	2 cut(s)	368, 544
TfiI	GAWTC	1 cut(s)	223
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	4 cut(s)	23, 83, 92, 152
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	4 cut(s)	23, 83, 92, 152
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	1 cut(s)	265
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.