Rh6AG082600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0023092
Physical Location & Seq
Reverse (-)
12407335 .. 12407673
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG082600.1

Sequence Viewer

Length: 339 bp
ATGACTTCTTCTACTTTCAGTGGCGATGAAACCGCTCCCTTCTTCAGTTGCCTCGGCTTCGCTGCTGCTCTCGTCTTCTTCTGTGACGCCTGTGACGAAACCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGTCAGAACTGTGACTGGGATATGCATAATCTTTCGTCGTGGACGATGCACGATAGGAGACCGATTGAGGGGTTTACTAGGAATCCTGGGTTGAACGAGCTACTAGCATTTGTGGGGTTTGAGAATTTGGATAAGAAAGGTTTAGTTTTTAGTGAGAGAGTAGTGGTAGTGGTGGAGGGTTTGATGGTCTGGGCTTGA

Protein Analysis

112

Amino Acids

12.4

Weight (kDa)

4.34

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 27 - 69 2.5e-07 B-box zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003012.1_g000011
rosa_samantha Rh6AG082600 Rh6BG077300 Rh6CG071900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 132, 241
AluI AGCT 2 cut(s) 132, 241
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 193
ApeKI GCWGC 2 cut(s) 62, 65
ApoI RAATTY 1 cut(s) 265
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 49, 52
BccI CCATC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 219, 245
BisI GCNGC 2 cut(s) 63, 66
BlsI GCNGC 2 cut(s) 64, 67
Bme1390I CCNGG 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 52, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 52, 227
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 49, 52
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 134
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 52, 227
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 49, 52
BstV2I GAAGAC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 25
CseI GACGC 1 cut(s) 95
CviJI RGCY 4 cut(s) 57, 132, 241, 335
CviKI_1 RGCY 4 cut(s) 57, 132, 241, 335
DdeI CTNAG 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 134
FaiI YATR 2 cut(s) 164, 168
Fnu4HI GCNGC 2 cut(s) 63, 66
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 63, 66
FspBI CTAG 2 cut(s) 219, 245
GluI GCNGC 2 cut(s) 63, 66
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 87
HinfI GANTC 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 183, 216
Hpy188I TCNGA 1 cut(s) 147
Hpy8I GTNNAC 2 cut(s) 183, 216
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 166, 190
HpyF3I CTNAG 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 6 cut(s) 103, 117, 142, 213, 240, 316
Lsp1109I GCAGC 2 cut(s) 49, 52
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 219, 245
MaeIII GTNAC 3 cut(s) 83, 92, 152
MbiI CCGCTC 1 cut(s) 35
MboII GAAGA 3 cut(s) 34, 67, 70
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 265
MnlI CCTC 3 cut(s) 62, 202, 310
Mph1103I ATGCAT 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 3 cut(s) 83, 92, 152
NsiI ATGCAT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 182
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 64, 67
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 134
SatI GCNGC 2 cut(s) 63, 66
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 134, 243, 283
SfaNI GCATC 1 cut(s) 177
Sse9I AATT 1 cut(s) 265
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 219, 245
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 152
TaqII GACCGA 1 cut(s) 217
TasI AATT 1 cut(s) 265
TfiI GAWTC 1 cut(s) 223
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 3 cut(s) 83, 92, 152
TseI GCWGC 2 cut(s) 62, 65
Tsp45I GTSAC 3 cut(s) 83, 92, 152
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 265
XspI CTAG 2 cut(s) 219, 245
Zsp2I ATGCAT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.