Rh6BG077300

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0023092
Physical Location & Seq
Reverse (-)
11916799 .. 11917209
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG077300.1

Sequence Viewer

Length: 411 bp
ATGCCTTCTTCTACTTTCAGCGGCGATGAAACTGCTCCCTTCTTCAGCTGCCTCGGCTCCGTTGCTGCTCTCGTCTTCTTCTATGACGCCTGTGACGAAACCCCTGCTTCTATTTTCTGCTCTACTGAGAGCTCTGTGCTGTGTCAGAACTGTGACTGGGATATGCACAATCTTTCGTCGTGGACGATGCACGATAGGAGACCGATTGAGGGGTTTACTGGGAATCCTGGGTTGAACGAGCTACTGGCATTTGTGGTGTTTGAGATTTTGGATAAGAAAGGTTTGGTTTTTAGTGAGGAGAGTAGTGGTAGTGGTGGAGGGTTTGATGGTCTGGGCTTGATCGGTCGTTGGGTTTATCTGATAGGTTTTTGGTCTAGAAAAATCTCTATGTTGTTAGTCTTGATGATTTGA

Protein Analysis

136

Amino Acids

14.93

Weight (kDa)

4.37

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023092)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003012.1_g000011
rosa_samantha Rh6AG082600 Rh6BG077300 Rh6CG071900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 3 cut(s) 48, 132, 241
AluI AGCT 3 cut(s) 48, 132, 241
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 193
ApeKI GCWGC 2 cut(s) 48, 65
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 35, 52
BccI CCATC 1 cut(s) 320
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 86, 120
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 375
BisI GCNGC 3 cut(s) 22, 49, 66
BlsI GCNGC 3 cut(s) 23, 50, 67
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 228
BmrI ACTGGG 2 cut(s) 166, 228
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 2 cut(s) 166, 228
BpiI GAAGAC 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 52, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 3 cut(s) 161, 223, 249
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 52, 227
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 3 cut(s) 161, 223, 249
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 35, 52
Bsh1285I CGRYCG 1 cut(s) 346
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 193
BsrI ACTGG 3 cut(s) 161, 223, 249
BssECI CCNNGG 2 cut(s) 52, 227
BssMI GATC 1 cut(s) 339
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 339
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 35, 52
BstV2I GAAGAC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 39
CseI GACGC 1 cut(s) 95
CviJI RGCY 5 cut(s) 48, 57, 132, 241, 336
CviKI_1 RGCY 5 cut(s) 48, 57, 132, 241, 336
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 28
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 134
FaiI YATR 3 cut(s) 84, 164, 389
Fnu4HI GCNGC 3 cut(s) 22, 49, 66
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 22, 49, 66
FspBI CTAG 1 cut(s) 375
GluI GCNGC 3 cut(s) 22, 49, 66
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 87
HinfI GANTC 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 183, 216
Hpy188I TCNGA 2 cut(s) 147, 360
Hpy188III TCNNGA 2 cut(s) 375, 400
Hpy8I GTNNAC 2 cut(s) 183, 216
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 15, 49
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 166, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 40, 62
LpnPI CCDG 8 cut(s) 103, 117, 142, 204, 213, 230, 240, 317
Lsp1109I GCAGC 2 cut(s) 35, 52
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 92, 152
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 3 cut(s) 34, 67, 70
MhlI GDGCHC 1 cut(s) 134
MnlI CCTC 4 cut(s) 62, 202, 289, 311
MspA1I CMGCKG 2 cut(s) 21, 48
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 339
NlaIV GGNNCC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 92, 152
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 182
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 3 cut(s) 23, 50, 67
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 134
SatI GCNGC 3 cut(s) 22, 49, 66
Sau3AI GATC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 134
SetI ASST 5 cut(s) 50, 134, 243, 283, 367
SfaNI GCATC 1 cut(s) 177
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 375
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 1 cut(s) 152
TaqII GACCGA 2 cut(s) 217, 332
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 223
TseFI GTSAC 2 cut(s) 92, 152
TseI GCWGC 2 cut(s) 48, 65
Tsp45I GTSAC 2 cut(s) 92, 152
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 374
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.