Rmu_sc0003022.1_g000003

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003022.1
Physical Location & Seq
Reverse (-)
2592 .. 2990
399 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
atgtttctgaggcgaactattgatcctagcctacgctgggagtaccttcagttgaagacacccaaagaattgtgggatgcccttaagggacgttttgggaacattcatgacactttgcttccagaactggccgttcagtggaatggaatccgattgcttgactataaaaaggtcaataacttcaacaaggacatgttgcgcttaaaggcacgtcttaatttctgtgggagggaaatcacagaagatgatataatctacaagactcttaccacctttcctacttcagcatttatactagcgaaccagtataagttggagtacgacaacaaaagaatcacaaccttcaataagtcgataagcctactgcaagtggctgaaagacataatgaggttctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

15.72

Weight (kDa)

9.41

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025550)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 32, 267
AfaI GTAC 2 cut(s) 44, 320
AfiI CCNNNNNNNGG 2 cut(s) 37, 138
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 55, 184, 346
AjiI CACGTC 1 cut(s) 212
AloI GAACNNNNNNTCC 2 cut(s) 7, 39
AlwI GGATC 1 cut(s) 17
AoxI GGCC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 116
BfaI CTAG 3 cut(s) 27, 296, 397
BfrI CTTAAG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 212
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 138
Bse1I ACTGG 2 cut(s) 132, 304
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 37, 138
BseNI ACTGG 2 cut(s) 132, 304
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 131
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 37, 138
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 22
BspANI GGCC 1 cut(s) 131
BspHI TCATGA 1 cut(s) 106
BspPI GGATC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 132, 304
BssMI GATC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 131
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 43, 319
CviAII CATG 2 cut(s) 107, 193
CviJI RGCY 4 cut(s) 30, 131, 360, 374
CviKI_1 RGCY 4 cut(s) 30, 131, 360, 374
CviQI GTAC 2 cut(s) 43, 319
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 32, 267
FaeI CATG 2 cut(s) 110, 196
FaiI YATR 7 cut(s) 108, 165, 194, 251, 293, 309, 384
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 106, 192
FokI GGATG 1 cut(s) 89
FspBI CTAG 3 cut(s) 27, 296, 397
GlaI GCGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 40
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 110, 196
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 3 cut(s) 147, 262, 333
Hpy188I TCNGA 2 cut(s) 9, 152
Hpy188III TCNNGA 2 cut(s) 107, 122
HpyAV CCTTC 2 cut(s) 56, 352
HpyCH4IV ACGT 2 cut(s) 91, 211
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 91, 211
Hsp92II CATG 2 cut(s) 110, 196
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 22, 113, 135, 317
LweI GCATC 1 cut(s) 67
MaeI CTAG 3 cut(s) 27, 296, 397
MaeII ACGT 2 cut(s) 91, 211
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 2 cut(s) 67, 254
MluCI AATT 2 cut(s) 68, 217
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 3 cut(s) 3, 222, 382
MseI TTAA 3 cut(s) 84, 203, 216
MspCI CTTAAG 1 cut(s) 83
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 110, 196
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 2 cut(s) 147, 333
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 36
RsaI GTAC 2 cut(s) 44, 320
RsaNI GTAC 2 cut(s) 43, 319
SaqAI TTAA 3 cut(s) 84, 203, 216
Sau3AI GATC 1 cut(s) 22
SchI GAGTC 1 cut(s) 256
SetI ASST 7 cut(s) 48, 94, 174, 214, 275, 344, 393
SfaNI GCATC 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 68, 217
SspMI CTAG 3 cut(s) 27, 296, 397
TaiI ACGT 2 cut(s) 94, 214
TaqI TCGA 1 cut(s) 353
TasI AATT 2 cut(s) 68, 217
TfiI GAWTC 2 cut(s) 147, 333
Tru1I TTAA 3 cut(s) 84, 203, 216
Tru9I TTAA 3 cut(s) 84, 203, 216
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 83
XceI RCATGY 1 cut(s) 196
XspI CTAG 3 cut(s) 27, 296, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.