Rmu_sc0004569.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004569.1
OG0025550
Physical Location & Seq
Reverse (-)
7986 .. 8547
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004569.1_g000003.1.cds

Sequence Viewer

Length: 516 bp
atgatgaactatctaataagcctacgctgggagtaccttcagttgaagacacccaaagaattgtgggatgcccttaagggacgttttgggaatattcatgacactttactcccagaactagctattcagtggaatggaatccgcttgcttgactataaaaaggtcaataacttcaacaaggacatgttgcgcttaaaggcacgtctcaatttttgtggaagggaaatcacagaagatgatatgatctacaagactcttaccacctttcctacttcagcatttatactagcgaaccagtataagttggagtatgacaacaaaagaatcacaaccttcaataaattgataagcctactgcaagtggctgagagacataatgagattctcttgaataacaatgccaggctgttacgccccgacttcgatttatccttgatctgtgtcgaagtgaatttctttatgttttgccgtcctcggtttcagtttttatcttttagggggggtgctagaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

171

Amino Acids

20.38

Weight (kDa)

9.45

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025550)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003022.1_g000003 Rmu_sc0004191.1_g000025 Rmu_sc0004569.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 2 cut(s) 23, 258
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 28
AflII CTTAAG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 4 cut(s) 46, 175, 337, 391
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw26I GTCTC 2 cut(s) 209, 364
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 453
BciT130I CCWGG 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 209, 364
BfaI CTAG 3 cut(s) 119, 287, 507
BfrI CTTAAG 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 403
BmgBI CACGTC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 209, 364
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 243, 435
BspACI CCGC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 74
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 2 cut(s) 243, 435
Bst2UI CCWGG 1 cut(s) 403
BstAFI CTTAAG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 2 cut(s) 246, 438
BstMAI GTCTC 2 cut(s) 209, 364
BstMBI GATC 2 cut(s) 243, 435
BstNI CCWGG 1 cut(s) 403
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 53
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 146
CciI TCATGA 1 cut(s) 97
CfoI GCGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 34
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 2 cut(s) 98, 184
CviJI RGCY 5 cut(s) 21, 122, 351, 365, 406
CviKI_1 RGCY 5 cut(s) 21, 122, 351, 365, 406
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 245, 437
DpnII GATC 2 cut(s) 243, 435
Eco57I CTGAAG 2 cut(s) 23, 258
EcoRII CCWGG 1 cut(s) 401
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 2 cut(s) 101, 187
FaiI YATR 9 cut(s) 99, 156, 185, 242, 284, 300, 312, 375, 461
FaqI GGGAC 1 cut(s) 93
FatI CATG 2 cut(s) 97, 183
FokI GGATG 1 cut(s) 80
FspBI CTAG 3 cut(s) 119, 287, 507
GlaI GCGC 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 101, 187
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 4 cut(s) 138, 253, 324, 382
Hpy188III TCNNGA 2 cut(s) 98, 388
HpyAV CCTTC 3 cut(s) 47, 213, 343
HpyCH4IV ACGT 2 cut(s) 82, 202
HpyCH4V TGCA 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 2 cut(s) 82, 202
Hsp92II CATG 2 cut(s) 101, 187
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 243, 435
LpnPI CCDG 5 cut(s) 13, 126, 308, 388, 415
LweI GCATC 1 cut(s) 58
MaeI CTAG 3 cut(s) 119, 287, 507
MaeII ACGT 2 cut(s) 82, 202
MaeIII GTNAC 1 cut(s) 408
MalI GATC 2 cut(s) 245, 437
MboI GATC 2 cut(s) 243, 435
MboII GAAGA 2 cut(s) 58, 245
MluCI AATT 4 cut(s) 59, 208, 341, 451
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 1 cut(s) 483
MseI TTAA 2 cut(s) 75, 194
MspCI CTTAAG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 403
MvaI CCWGG 1 cut(s) 403
NdeII GATC 2 cut(s) 243, 435
NlaIII CATG 2 cut(s) 101, 187
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 97
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 3 cut(s) 138, 324, 382
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 1 cut(s) 401
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 75, 194
Sau3AI GATC 2 cut(s) 243, 435
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 403
SetI ASST 7 cut(s) 39, 85, 124, 165, 205, 266, 335
SfaNI GCATC 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 59, 208, 341, 451
SsiI CCGC 1 cut(s) 142
SspI AATATT 1 cut(s) 94
SspMI CTAG 3 cut(s) 119, 287, 507
StyD4I CCNGG 1 cut(s) 401
TaiI ACGT 2 cut(s) 85, 205
TaqI TCGA 2 cut(s) 423, 444
TasI AATT 4 cut(s) 59, 208, 341, 451
TfiI GAWTC 3 cut(s) 138, 324, 382
Tru1I TTAA 2 cut(s) 75, 194
Tru9I TTAA 2 cut(s) 75, 194
TscAI CASTG 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 20, 86
TspRI CASTG 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 74
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 187
XspI CTAG 3 cut(s) 119, 287, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.