Rmu_sc0003037.1_g000001

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003037.1
OG0031240
Physical Location & Seq
Reverse (-)
3563 .. 7301
3739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003037.1_g000001.1.cds

Sequence Viewer

Length: 897 bp
atggcggagaccgacttggaccgctgcagggcccaggtggtggccggggaggagatgggctggaacttgagtgagagggacgagagcccgccggagacccgaagcctagtcgaggccggaggcctgggagacggatggtcagaagtaactcaatttggttttaaattagtttacaaaagtacagctcgggaccggagatacaatcaagttgcgatttcagtgatgatcagtcgccggcgagagagacagaagaaaatcgaagacgtacccgattctactggcggtcgtcgattccttcagaaggtccaaccaggcctcgacgagcttctcagcgacgaggactttctgcttagcgtcgagcctggccgcagagagcacgatgacgagtttcggttctgcgatgacgagagccggagtcgtgggcaacctgctggagggatggagggagggagagagagagagagccgacaaagcatgtctagtcctcttcggttccttccattccagctcttcttcgttctcgcaactcttttcggtccctctcaggccgatgttggcaccgctgcccactacagcccaccgtatctgcctacgtcctgctttggtagagattcgtcgcagtttccttcaagcaacctgtttgggtcagcgggagcaggaatatgggacaacggagcagcctgtggcaggcagtatctggtgaggtgcataagcgccgctgtcccgaaaacttgcattccggggcagacgattcagatcaagattgtggatcgcgcgctttcttctaagtctaggccttcgaggaatgatgctatcatggtgctttccacaactgcatttgccgccatcgccaactcttctgcttcatttgttaacgttgaatttcaacaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

298

Amino Acids

32.87

Weight (kDa)

5.65

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031240)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003037.1_g000001 Rmu_sc0013512.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 40
AccII CGCG 2 cut(s) 774, 776
AciI CCGC 9 cut(s) 5, 22, 89, 282, 367, 561, 650, 717, 843
AclI AACGTT 1 cut(s) 876
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 2 cut(s) 42, 364
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 2 cut(s) 181, 267
AfiI CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
AgsI TTSAA 3 cut(s) 630, 881, 887
AhdI GACNNNNNGTC 1 cut(s) 136
AjnI CCWGG 4 cut(s) 33, 123, 310, 361
AluBI AGCT 3 cut(s) 185, 325, 508
AluI AGCT 3 cut(s) 185, 325, 508
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 4 cut(s) 2, 89, 123, 238
AlwI GGATC 1 cut(s) 777
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 8 cut(s) 30, 42, 114, 121, 313, 364, 546, 794
ApaI GGGCCC 1 cut(s) 34
ApeKI GCWGC 3 cut(s) 24, 563, 677
ApoI RAATTY 1 cut(s) 881
AspLEI GCGC 3 cut(s) 716, 776, 778
AspS9I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
AsuC2I CCSGG 2 cut(s) 46, 741
AsuHPI GGTGA 1 cut(s) 712
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 4 cut(s) 19, 190, 304, 536
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 2 cut(s) 34, 89
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 11, 550, 689
BccI CCATC 4 cut(s) 49, 129, 433, 854
BciT130I CCWGG 4 cut(s) 35, 125, 312, 363
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 2 cut(s) 46, 741
BcoDI GTCTC 4 cut(s) 2, 89, 123, 238
BfaI CTAG 3 cut(s) 107, 480, 792
BfmI CTRYAG 2 cut(s) 25, 571
BfoI RGCGCY 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 6 cut(s) 26, 368, 565, 679, 718, 844
Bme1390I CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
Bme18I GGWCC 4 cut(s) 19, 190, 304, 536
BmeRI GACNNNNNGTC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
BmiI GGNNCC 5 cut(s) 32, 191, 494, 538, 559
BmrFI CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
BmsI GCATC 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 2 cut(s) 46, 741
BsaBI GATNNNNATC 1 cut(s) 755
BsaI GGTCTC 2 cut(s) 2, 89
BsaJI CCNNGG 4 cut(s) 33, 45, 124, 740
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 755
BseBI CCWGG 4 cut(s) 35, 125, 312, 363
BseDI CCNNGG 4 cut(s) 33, 45, 124, 740
BseGI GGATG 2 cut(s) 140, 444
BseJI GATNNNNATC 1 cut(s) 755
BseLI CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
BseMII CTCAG 2 cut(s) 343, 557
BseNI ACTGG 1 cut(s) 283
BsePI GCGCGC 1 cut(s) 774
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 3 cut(s) 11, 550, 689
Bsh1236I CGCG 2 cut(s) 774, 776
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
BslFI GGGAC 5 cut(s) 92, 203, 522, 680, 707
BslI CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
BsmAI GTCTC 4 cut(s) 2, 89, 123, 238
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 5 cut(s) 92, 203, 522, 680, 707
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
Bso31I GGTCTC 2 cut(s) 2, 89
BsoBI CYCGRG 1 cut(s) 186
Bsp120I GGGCCC 1 cut(s) 30
Bsp1286I GDGCHC 3 cut(s) 34, 89, 378
Bsp143I GATC 3 cut(s) 225, 756, 769
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 9 cut(s) 5, 22, 89, 282, 367, 561, 650, 717, 843
BspANI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
BspCNI CTCAG 2 cut(s) 342, 556
BspFNI CGCG 2 cut(s) 774, 776
BspLI GGNNCC 5 cut(s) 32, 191, 494, 538, 559
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 777
BspQI GCTCTTC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 557
BspTNI GGTCTC 2 cut(s) 2, 89
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 4 cut(s) 33, 45, 124, 740
BssHII GCGCGC 1 cut(s) 774
BssMI GATC 3 cut(s) 225, 756, 769
Bst2UI CCWGG 4 cut(s) 35, 125, 312, 363
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 3 cut(s) 492, 515, 862
BstC8I GCNNGC 4 cut(s) 89, 236, 689, 776
BstDEI CTNAG 4 cut(s) 329, 350, 543, 786
BstENI CCTNNNNNAGG 4 cut(s) 110, 299, 432, 685
BstF5I GGATG 2 cut(s) 140, 444
BstFNI CGCG 2 cut(s) 774, 776
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 3 cut(s) 716, 776, 778
BstKTI GATC 3 cut(s) 228, 759, 772
BstMAI GTCTC 4 cut(s) 2, 89, 123, 238
BstMBI GATC 3 cut(s) 225, 756, 769
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 471, 842, 848
BstNI CCWGG 4 cut(s) 35, 125, 312, 363
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 6 cut(s) 33, 44, 123, 310, 361, 739
BstSFI CTRYAG 2 cut(s) 25, 571
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 2 cut(s) 774, 776
BstV1I GCAGC 3 cut(s) 11, 550, 689
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
BtgZI GCGATG 2 cut(s) 414, 832
BtsCI GGATG 2 cut(s) 140, 444
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 4 cut(s) 89, 236, 689, 776
CaiI CAGNNNCTG 1 cut(s) 697
CfoI GCGC 3 cut(s) 716, 776, 778
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
CseI GACGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 180, 266
CviAII CATG 2 cut(s) 475, 817
CviQI GTAC 2 cut(s) 180, 266
DdeI CTNAG 4 cut(s) 329, 350, 543, 786
DpnI GATC 3 cut(s) 227, 758, 771
DpnII GATC 3 cut(s) 225, 756, 769
DraI TTTAAA 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 42, 364
Eam1104I CTCTTC 3 cut(s) 492, 515, 862
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 3 cut(s) 492, 515, 862
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 3 cut(s) 123, 315, 796
Eco24I GRGCYC 2 cut(s) 34, 89
Eco31I GGTCTC 2 cut(s) 2, 89
Eco47I GGWCC 4 cut(s) 19, 190, 304, 536
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 186
EcoNI CCTNNNNNAGG 4 cut(s) 110, 299, 432, 685
EcoO109I RGGNCCY 1 cut(s) 30
EcoRII CCWGG 4 cut(s) 33, 123, 310, 361
EcoT38I GRGCYC 2 cut(s) 34, 89
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 478, 820
FaiI YATR 4 cut(s) 476, 664, 710, 818
FaqI GGGAC 5 cut(s) 92, 203, 522, 680, 707
FatI CATG 2 cut(s) 474, 816
FauI CCCGC 2 cut(s) 96, 643
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
FokI GGATG 2 cut(s) 147, 451
FriOI GRGCYC 2 cut(s) 34, 89
Fsp4HI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
FspBI CTAG 3 cut(s) 107, 480, 792
GlaI GCGC 3 cut(s) 715, 775, 777
GluI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
HapII CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
HgaI GACGC 1 cut(s) 343
HhaI GCGC 3 cut(s) 716, 776, 778
Hin1II CATG 2 cut(s) 478, 820
Hin6I GCGC 3 cut(s) 714, 774, 776
HinP1I GCGC 3 cut(s) 714, 774, 776
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 5 cut(s) 272, 291, 415, 611, 751
HpaI GTTAAC 1 cut(s) 874
HpaII CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 2 cut(s) 172, 874
Hpy188I TCNGA 3 cut(s) 142, 300, 756
Hpy188III TCNNGA 3 cut(s) 188, 724, 760
Hpy8I GTNNAC 2 cut(s) 172, 874
Hpy99I CGWCG 5 cut(s) 291, 323, 338, 359, 619
HpyAV CCTTC 5 cut(s) 295, 305, 506, 636, 807
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 3 cut(s) 264, 593, 876
HpyCH4V TGCA 4 cut(s) 27, 708, 735, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 471, 842, 848
HpyF3I CTNAG 4 cut(s) 329, 350, 543, 786
HpySE526I ACGT 3 cut(s) 264, 593, 876
Hsp92II CATG 2 cut(s) 478, 820
HspAI GCGC 3 cut(s) 714, 774, 776
KroI GCCGGC 1 cut(s) 234
KroNI GCCGGC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 225
KspAI GTTAAC 1 cut(s) 874
Kzo9I GATC 3 cut(s) 225, 756, 769
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 653, 674
Lsp1109I GCAGC 3 cut(s) 11, 550, 689
LweI GCATC 1 cut(s) 799
MaeI CTAG 3 cut(s) 107, 480, 792
MaeII ACGT 3 cut(s) 264, 593, 876
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 227, 758, 771
MboI GATC 3 cut(s) 225, 756, 769
MboII GAAGA 7 cut(s) 262, 272, 479, 502, 505, 774, 849
MhlI GDGCHC 3 cut(s) 34, 89, 378
MluCI AATT 3 cut(s) 152, 164, 881
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 331
MreI CGCCGGCG 1 cut(s) 234
MroNI GCCGGC 1 cut(s) 234
MseI TTAA 2 cut(s) 162, 873
MspA1I CMGCKG 4 cut(s) 24, 563, 650, 719
MspI CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
MspR9I CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 4 cut(s) 35, 125, 312, 363
MvnI CGCG 2 cut(s) 774, 776
MwoI GCNNNNNNNGC 3 cut(s) 471, 842, 848
NaeI GCCGGC 1 cut(s) 236
NciI CCSGG 2 cut(s) 46, 741
NdeII GATC 3 cut(s) 225, 756, 769
NgoMIV GCCGGC 1 cut(s) 234
NlaIII CATG 2 cut(s) 478, 820
NlaIV GGNNCC 5 cut(s) 32, 191, 494, 538, 559
NspI RCATGY 1 cut(s) 478
PauI GCGCGC 1 cut(s) 774
PceI AGGCCT 3 cut(s) 123, 315, 796
PciSI GCTCTTC 1 cut(s) 515
PctI GAATGC 1 cut(s) 735
PdiI GCCGGC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 272, 291, 611, 751
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 6 cut(s) 26, 368, 565, 679, 718, 844
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 876
Psp6I CCWGG 4 cut(s) 33, 123, 310, 361
PspGI CCWGG 4 cut(s) 33, 123, 310, 361
PspN4I GGNNCC 5 cut(s) 32, 191, 494, 538, 559
PspOMI GGGCCC 1 cut(s) 30
PspPI GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
PstI CTGCAG 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 697
PteI GCGCGC 1 cut(s) 774
RsaI GTAC 2 cut(s) 181, 267
RsaNI GTAC 2 cut(s) 180, 266
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 162, 873
SatI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
Sau3AI GATC 3 cut(s) 225, 756, 769
Sau96I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
SduI GDGCHC 3 cut(s) 34, 89, 378
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 2 cut(s) 25, 571
SgrAI CRCCGGYG 1 cut(s) 234
SinI GGWCC 4 cut(s) 19, 190, 304, 536
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 3 cut(s) 152, 164, 881
SseBI AGGCCT 3 cut(s) 123, 315, 796
SsiI CCGC 9 cut(s) 5, 22, 89, 282, 367, 561, 650, 717, 843
SspMI CTAG 3 cut(s) 107, 480, 792
StuI AGGCCT 3 cut(s) 123, 315, 796
StyD4I CCNGG 6 cut(s) 33, 44, 123, 310, 361, 739
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 3 cut(s) 267, 596, 879
TaqI TCGA 6 cut(s) 111, 258, 289, 318, 357, 800
TaqII GACCGA 2 cut(s) 26, 524
TasI AATT 3 cut(s) 152, 164, 881
TatI WGTACW 1 cut(s) 179
TauI GCSGC 3 cut(s) 369, 719, 845
TfiI GAWTC 4 cut(s) 272, 291, 611, 751
Tru1I TTAA 2 cut(s) 162, 873
Tru9I TTAA 2 cut(s) 162, 873
TscAI CASTG 1 cut(s) 225
TseI GCWGC 3 cut(s) 24, 563, 677
TspDTI ATGAA 1 cut(s) 855
TspGWI ACGGA 2 cut(s) 147, 687
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 4 cut(s) 19, 190, 304, 536
XagI CCTNNNNNAGG 4 cut(s) 110, 299, 432, 685
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 478
XspI CTAG 3 cut(s) 107, 480, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.