Rmu_sc0013512.1_g000001

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013512.1
OG0031240
Physical Location & Seq
Reverse (-)
4477 .. 8137
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013512.1_g000001.1.cds

Sequence Viewer

Length: 939 bp
atggcaacgtactcgcccatggtggagaccgacttggaccgctgcagggcccaggtggtggcaggggaggagatgggctggaacttgagtgagagggacgagagccttcgcagaagaccagaagcctggtcgaggcaggaggcctgggagacagtcgttttgcaacaatcccggttgactgtttgccttcacactgatttgactccgattgcaacgactctggttgcagcccgggaccggagatacaatcaagttgcgatttccgtgatgatcagtcgccggcgagagagacagaagcaaattgaagacgtacccgattctactggcagtcgtcgattccttcagaaggtccaacccggcctcgccgagcttctcagagacgaggaccgtcggcttggcgtcgagcctggccacagagagcacgatgacgagtttcggtgcggcgatgacgagagccggagtcgtgggcaacctgctggagggatggagggagggagagagagagagatccgacaaagcatgtctagtcctcttcggttccttccattccagctcttcttcgttctcgcaactcttttcggtccctctcaggccgatgttggcaccgctgcccactacagcccaccgtatctgcctacgtcctgctttggtagcgatccttcgcagtttccttcaagcaacctgtttgggtcagccggagaaggaatatgggacaacggagcagcctgtggcaggcagtatctggtgaggtgcataagcgccgctgtcccgaaaacttgcattccggggcagacgattcagatcaagattgtggatcgcgcgctttcttctaagtctaggccttcgaggaatgatgctatcatggtgctttccacaactgcatttgccgccatcgccaactcttctgcttcatttgttaacgttgaatttcaacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

312

Amino Acids

34.73

Weight (kDa)

6.47

Isoelectric Point (pI)

66.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031240)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003037.1_g000001 Rmu_sc0013512.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 58
AccII CGCG 2 cut(s) 819, 821
AciI CCGC 5 cut(s) 40, 441, 606, 762, 888
AclI AACGTT 1 cut(s) 921
AclWI GGATC 3 cut(s) 502, 650, 822
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 1 cut(s) 926
AcuI CTGAAG 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 2 cut(s) 11, 312
AfiI CCNNNNNNNGG 7 cut(s) 46, 58, 132, 237, 346, 479, 732
AgsI TTSAA 4 cut(s) 305, 675, 926, 932
AjnI CCWGG 4 cut(s) 51, 125, 143, 406
AluBI AGCT 2 cut(s) 370, 553
AluI AGCT 2 cut(s) 370, 553
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 4 cut(s) 20, 143, 283, 372
AlwI GGATC 3 cut(s) 502, 650, 822
AlwNI CAGNNNCTG 1 cut(s) 742
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 6 cut(s) 48, 141, 358, 409, 591, 839
ApaI GGGCCC 1 cut(s) 52
ApeKI GCWGC 4 cut(s) 42, 227, 608, 722
ApoI RAATTY 1 cut(s) 926
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AspLEI GCGC 3 cut(s) 761, 821, 823
AspS9I GGNCC 7 cut(s) 37, 48, 49, 235, 349, 385, 581
AsuC2I CCSGG 5 cut(s) 172, 232, 233, 357, 786
AsuHPI GGTGA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 5 cut(s) 37, 235, 349, 385, 581
BaeGI GKGCMC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 411
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 52
BarI GAAGNNNNNNTAC 2 cut(s) 643, 675
BbsI GAAGAC 2 cut(s) 121, 312
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 29, 239, 595, 734
BccI CCATC 3 cut(s) 67, 478, 899
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 4 cut(s) 53, 127, 145, 408
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 5 cut(s) 172, 232, 233, 357, 786
BcoDI GTCTC 4 cut(s) 20, 143, 283, 372
BfaI CTAG 2 cut(s) 525, 837
BfmI CTRYAG 2 cut(s) 43, 616
BfoI RGCGCY 1 cut(s) 762
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 7 cut(s) 43, 228, 442, 609, 723, 762, 888
BlsI GCNGC 7 cut(s) 44, 229, 443, 610, 724, 763, 889
Bme1390I CCNGG 9 cut(s) 53, 127, 145, 172, 232, 233, 357, 408, 786
Bme18I GGWCC 5 cut(s) 37, 235, 349, 385, 581
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 7 cut(s) 37, 48, 49, 235, 349, 385, 581
BmiI GGNNCC 5 cut(s) 50, 236, 539, 583, 604
BmrFI CCNGG 9 cut(s) 53, 127, 145, 172, 232, 233, 357, 408, 786
BmsI GCATC 1 cut(s) 844
BpiI GAAGAC 2 cut(s) 121, 312
BpmI CTGGAG 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 5 cut(s) 172, 232, 233, 357, 786
BsaBI GATNNNNATC 1 cut(s) 800
BsaHI GRCGYC 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 5 cut(s) 18, 51, 144, 231, 785
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 7 cut(s) 46, 58, 132, 237, 346, 479, 732
Bse118I RCCGGY 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 800
BseBI CCWGG 4 cut(s) 53, 127, 145, 408
BseDI CCNNGG 5 cut(s) 18, 51, 144, 231, 785
BseGI GGATG 1 cut(s) 489
BseJI GATNNNNATC 1 cut(s) 800
BseLI CCNNNNNNNGG 7 cut(s) 46, 58, 132, 237, 346, 479, 732
BseMII CTCAG 2 cut(s) 388, 602
BseNI ACTGG 1 cut(s) 328
BsePI GCGCGC 1 cut(s) 819
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 4 cut(s) 29, 239, 595, 734
Bsh1236I CGCG 2 cut(s) 819, 821
BshFI GGCC 6 cut(s) 50, 143, 360, 411, 593, 841
BshNI GGYRCC 1 cut(s) 602
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 8 cut(s) 172, 232, 238, 280, 357, 457, 696, 785
BslFI GGGAC 5 cut(s) 110, 248, 567, 725, 752
BslI CCNNNNNNNGG 7 cut(s) 46, 58, 132, 237, 346, 479, 732
BsmAI GTCTC 4 cut(s) 20, 143, 283, 372
BsmBI CGTCTC 1 cut(s) 372
BsmFI GGGAC 5 cut(s) 110, 248, 567, 725, 752
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 6 cut(s) 50, 143, 360, 411, 593, 841
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 231
Bsp120I GGGCCC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 52, 423
Bsp143I GATC 5 cut(s) 270, 507, 655, 801, 814
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 5 cut(s) 40, 441, 606, 762, 888
BspANI GGCC 6 cut(s) 50, 143, 360, 411, 593, 841
BspCNI CTCAG 2 cut(s) 387, 601
BspFNI CGCG 2 cut(s) 819, 821
BspLI GGNNCC 5 cut(s) 50, 236, 539, 583, 604
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 3 cut(s) 502, 650, 822
BspQI GCTCTTC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 279
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 5 cut(s) 18, 51, 144, 231, 785
BssHII GCGCGC 1 cut(s) 819
BssMI GATC 5 cut(s) 270, 507, 655, 801, 814
BssNI GRCGYC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 4 cut(s) 53, 127, 145, 408
Bst4CI ACNGT 5 cut(s) 154, 181, 389, 627, 936
Bst6I CTCTTC 3 cut(s) 537, 560, 907
BstACI GRCGYC 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 281, 734, 821
BstDEI CTNAG 3 cut(s) 374, 588, 831
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 4 cut(s) 130, 344, 477, 730
BstF5I GGATG 1 cut(s) 489
BstFNI CGCG 2 cut(s) 819, 821
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 3 cut(s) 761, 821, 823
BstKTI GATC 5 cut(s) 273, 510, 658, 804, 817
BstMAI GTCTC 4 cut(s) 20, 143, 283, 372
BstMBI GATC 5 cut(s) 270, 507, 655, 801, 814
BstMWI GCNNNNNNNGC 3 cut(s) 651, 887, 893
BstNI CCWGG 4 cut(s) 53, 127, 145, 408
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 9 cut(s) 51, 125, 143, 170, 230, 231, 355, 406, 784
BstSFI CTRYAG 2 cut(s) 43, 616
BstSLI GKGCMC 1 cut(s) 52
BstUI CGCG 2 cut(s) 819, 821
BstV1I GCAGC 4 cut(s) 29, 239, 595, 734
BstV2I GAAGAC 2 cut(s) 121, 312
BstX2I RGATCY 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 126
BstYI RGATCY 1 cut(s) 507
BsuRI GGCC 6 cut(s) 50, 143, 360, 411, 593, 841
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 2 cut(s) 459, 877
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 3 cut(s) 281, 734, 821
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 3 cut(s) 761, 821, 823
Cfr10I RCCGGY 1 cut(s) 279
Cfr13I GGNCC 7 cut(s) 37, 48, 49, 235, 349, 385, 581
Cfr9I CCCGGG 1 cut(s) 231
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 10, 311
CviAII CATG 3 cut(s) 19, 520, 862
CviQI GTAC 2 cut(s) 10, 311
DdeI CTNAG 3 cut(s) 374, 588, 831
DpnI GATC 5 cut(s) 272, 509, 657, 803, 816
DpnII GATC 5 cut(s) 270, 507, 655, 801, 814
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 537, 560, 907
EarI CTCTTC 3 cut(s) 537, 560, 907
Eco130I CCWWGG 1 cut(s) 18
Eco147I AGGCCT 2 cut(s) 143, 841
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 5 cut(s) 37, 235, 349, 385, 581
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 231
EcoNI CCTNNNNNAGG 4 cut(s) 130, 344, 477, 730
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 4 cut(s) 51, 125, 143, 406
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 372
FaeI CATG 3 cut(s) 22, 523, 865
FaiI YATR 5 cut(s) 20, 521, 709, 755, 863
FaqI GGGAC 5 cut(s) 110, 248, 567, 725, 752
FatI CATG 3 cut(s) 18, 519, 861
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 7 cut(s) 43, 228, 442, 609, 723, 762, 888
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 7 cut(s) 43, 228, 442, 609, 723, 762, 888
FspBI CTAG 2 cut(s) 525, 837
GlaI GCGC 3 cut(s) 760, 820, 822
GluI GCNGC 7 cut(s) 43, 228, 442, 609, 723, 762, 888
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 6 cut(s) 50, 143, 360, 411, 593, 841
HapII CCGG 8 cut(s) 172, 232, 238, 280, 357, 457, 696, 785
HgaI GACGC 1 cut(s) 388
HhaI GCGC 3 cut(s) 761, 821, 823
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 3 cut(s) 22, 523, 865
Hin6I GCGC 3 cut(s) 759, 819, 821
HinP1I GCGC 3 cut(s) 759, 819, 821
HincII GTYRAC 2 cut(s) 177, 919
HindII GTYRAC 2 cut(s) 177, 919
HinfI GANTC 6 cut(s) 202, 217, 317, 336, 460, 796
HpaI GTTAAC 1 cut(s) 919
HpaII CCGG 8 cut(s) 172, 232, 238, 280, 357, 457, 696, 785
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 2 cut(s) 177, 919
Hpy188I TCNGA 5 cut(s) 207, 345, 377, 512, 801
Hpy188III TCNNGA 2 cut(s) 769, 805
Hpy8I GTNNAC 2 cut(s) 177, 919
Hpy99I CGWCG 3 cut(s) 336, 393, 404
HpyAV CCTTC 9 cut(s) 116, 197, 340, 350, 551, 669, 681, 695, 852
HpyCH4III ACNGT 5 cut(s) 154, 181, 389, 627, 936
HpyCH4IV ACGT 4 cut(s) 8, 309, 638, 921
HpyCH4V TGCA 7 cut(s) 45, 163, 212, 227, 753, 780, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 651, 887, 893
HpyF3I CTNAG 3 cut(s) 374, 588, 831
HpySE526I ACGT 4 cut(s) 8, 309, 638, 921
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 3 cut(s) 22, 523, 865
HspAI GCGC 3 cut(s) 759, 819, 821
KroI GCCGGC 1 cut(s) 279
KroNI GCCGGC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 919
Kzo9I GATC 5 cut(s) 270, 507, 655, 801, 814
LguI GCTCTTC 1 cut(s) 560
LmnI GCTCC 1 cut(s) 719
Lsp1109I GCAGC 4 cut(s) 29, 239, 595, 734
LweI GCATC 1 cut(s) 844
MaeI CTAG 2 cut(s) 525, 837
MaeII ACGT 4 cut(s) 8, 309, 638, 921
MalI GATC 5 cut(s) 272, 509, 657, 803, 816
MboI GATC 5 cut(s) 270, 507, 655, 801, 814
MboII GAAGA 7 cut(s) 126, 317, 524, 547, 550, 819, 894
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 2 cut(s) 52, 423
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 2 cut(s) 300, 926
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 196, 211, 469
MmeI TCCRAC 2 cut(s) 376, 535
Mox20I TGGCCA 1 cut(s) 411
MreI CGCCGGCG 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 411
MseI TTAA 1 cut(s) 918
Msp20I TGGCCA 1 cut(s) 411
MspA1I CMGCKG 3 cut(s) 42, 608, 764
MspI CCGG 8 cut(s) 172, 232, 238, 280, 357, 457, 696, 785
MspR9I CCNGG 9 cut(s) 53, 127, 145, 172, 232, 233, 357, 408, 786
Mva1269I GAATGC 1 cut(s) 780
MvaI CCWGG 4 cut(s) 53, 127, 145, 408
MvnI CGCG 2 cut(s) 819, 821
MwoI GCNNNNNNNGC 3 cut(s) 651, 887, 893
NaeI GCCGGC 1 cut(s) 281
NciI CCSGG 5 cut(s) 172, 232, 233, 357, 786
NcoI CCATGG 1 cut(s) 18
NdeII GATC 5 cut(s) 270, 507, 655, 801, 814
NgoMIV GCCGGC 1 cut(s) 279
NlaIII CATG 3 cut(s) 22, 523, 865
NlaIV GGNNCC 5 cut(s) 50, 236, 539, 583, 604
NmeAIII GCCGAG 1 cut(s) 391
NspI RCATGY 1 cut(s) 523
PauI GCGCGC 1 cut(s) 819
PceI AGGCCT 2 cut(s) 143, 841
PciSI GCTCTTC 1 cut(s) 560
PctI GAATGC 1 cut(s) 780
PdiI GCCGGC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 317, 336, 796
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 7 cut(s) 44, 229, 443, 610, 724, 763, 889
PleI GAGTC 3 cut(s) 196, 211, 468
PpsI GAGTC 3 cut(s) 196, 211, 468
Psp1406I AACGTT 1 cut(s) 921
Psp6I CCWGG 4 cut(s) 51, 125, 143, 406
PspGI CCWGG 4 cut(s) 51, 125, 143, 406
PspN4I GGNNCC 5 cut(s) 50, 236, 539, 583, 604
PspOMI GGGCCC 1 cut(s) 48
PspPI GGNCC 7 cut(s) 37, 48, 49, 235, 349, 385, 581
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 507
PteI GCGCGC 1 cut(s) 819
RsaI GTAC 2 cut(s) 11, 312
RsaNI GTAC 2 cut(s) 10, 311
SapI GCTCTTC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 7 cut(s) 43, 228, 442, 609, 723, 762, 888
Sau3AI GATC 5 cut(s) 270, 507, 655, 801, 814
Sau96I GGNCC 7 cut(s) 37, 48, 49, 235, 349, 385, 581
SchI GAGTC 3 cut(s) 196, 211, 469
ScrFI CCNGG 9 cut(s) 53, 127, 145, 172, 232, 233, 357, 408, 786
SduI GDGCHC 2 cut(s) 52, 423
SfaNI GCATC 1 cut(s) 844
SfcI CTRYAG 2 cut(s) 43, 616
SgrAI CRCCGGYG 1 cut(s) 279
SinI GGWCC 5 cut(s) 37, 235, 349, 385, 581
SmaI CCCGGG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 2 cut(s) 300, 926
SseBI AGGCCT 2 cut(s) 143, 841
SsiI CCGC 5 cut(s) 40, 441, 606, 762, 888
SspMI CTAG 2 cut(s) 525, 837
StuI AGGCCT 2 cut(s) 143, 841
StyD4I CCNGG 9 cut(s) 51, 125, 143, 170, 230, 231, 355, 406, 784
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 5 cut(s) 154, 181, 389, 627, 936
TaiI ACGT 4 cut(s) 11, 312, 641, 924
TaqI TCGA 4 cut(s) 131, 334, 402, 845
TaqII GACCGA 2 cut(s) 44, 569
TasI AATT 2 cut(s) 300, 926
TauI GCSGC 3 cut(s) 444, 764, 890
TfiI GAWTC 3 cut(s) 317, 336, 796
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 1 cut(s) 199
TseI GCWGC 4 cut(s) 42, 227, 608, 722
TspDTI ATGAA 1 cut(s) 900
TspGWI ACGGA 2 cut(s) 253, 732
TspMI CCCGGG 1 cut(s) 231
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 5 cut(s) 37, 235, 349, 385, 581
XagI CCTNNNNNAGG 4 cut(s) 130, 344, 477, 730
XapI RAATTY 1 cut(s) 926
XceI RCATGY 1 cut(s) 523
XmaI CCCGGG 1 cut(s) 231
XspI CTAG 2 cut(s) 525, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.