Rmu_sc0003037.1_g000001

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003037.1
OG0031240
Physical Location & Seq
Reverse (-)
3563 .. 7301
3739 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
atggcggagaccgacttggaccgctgcagggcccaggtggtggccggggaggagatgggctggaacttgagtgagagggacgagagcccgccggagacccgaagcctagtcgaggccggaggcctgggagacggatggtcagaagtaactcaatttggttttaaattagtttacaaaagtacagctcgggaccggagatacaatcaagttgcgatttcagtgatgatcagtcgccggcgagagagacagaagaaaatcgaagacgtacccgattctactggcggtcgtcgattccttcagaaggtccaaccaggcctcgacgagcttctcagcgacgaggactttctgcttagcgtcgagcctggccgcagagagcacgatgacgagtttcggttctgcgatgacgagagccggagtcgtgggcaacctgctggagggatggagggagggagagagagagagagccgacaaagcatgtctagtcctcttcggttccttccattccagctcttcttcgttctcgcaactcttttcggtccctctcaggccgatgttggcaccgctgcccactacagcccaccgtatctgcctacgtcctgctttggtagagattcgtcgcagtttccttcaagcaacctgtttgggtcagcgggagcaggaatatgggacaacggagcagcctgtggcaggcagtatctggtgaggtgcataagcgccgctgtcccgaaaacttgcattccggggcagacgattcagatcaagattgtggatcgcgcgctttcttctaagtctaggccttcgaggaatgatgctatcatggtgctttccacaactgcatttgccgccatcgccaactcttctgcttcatttgttaacgttgaatttcaacaggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

298

Amino Acids

32.87

Weight (kDa)

5.65

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 219 - 295 7.3e-10 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031240)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003037.1_g000001 Rmu_sc0013512.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 40
AccII CGCG 2 cut(s) 774, 776
AciI CCGC 9 cut(s) 5, 22, 89, 282, 367, 561, 650, 717, 843
AclI AACGTT 1 cut(s) 876
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 2 cut(s) 42, 364
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 2 cut(s) 181, 267
AfiI CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
AgsI TTSAA 3 cut(s) 630, 881, 887
AhdI GACNNNNNGTC 1 cut(s) 136
AjnI CCWGG 4 cut(s) 33, 123, 310, 361
AluBI AGCT 3 cut(s) 185, 325, 508
AluI AGCT 3 cut(s) 185, 325, 508
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 4 cut(s) 2, 89, 123, 238
AlwI GGATC 1 cut(s) 777
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 8 cut(s) 30, 42, 114, 121, 313, 364, 546, 794
ApaI GGGCCC 1 cut(s) 34
ApeKI GCWGC 3 cut(s) 24, 563, 677
ApoI RAATTY 1 cut(s) 881
AspLEI GCGC 3 cut(s) 716, 776, 778
AspS9I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
AsuC2I CCSGG 2 cut(s) 46, 741
AsuHPI GGTGA 1 cut(s) 712
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 4 cut(s) 19, 190, 304, 536
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 557
BanII GRGCYC 2 cut(s) 34, 89
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 11, 550, 689
BccI CCATC 4 cut(s) 49, 129, 433, 854
BciT130I CCWGG 4 cut(s) 35, 125, 312, 363
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 2 cut(s) 46, 741
BcoDI GTCTC 4 cut(s) 2, 89, 123, 238
BfaI CTAG 3 cut(s) 107, 480, 792
BfmI CTRYAG 2 cut(s) 25, 571
BfoI RGCGCY 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 6 cut(s) 26, 368, 565, 679, 718, 844
Bme1390I CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
Bme18I GGWCC 4 cut(s) 19, 190, 304, 536
BmeRI GACNNNNNGTC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
BmiI GGNNCC 5 cut(s) 32, 191, 494, 538, 559
BmrFI CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
BmsI GCATC 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 2 cut(s) 46, 741
BsaBI GATNNNNATC 1 cut(s) 755
BsaI GGTCTC 2 cut(s) 2, 89
BsaJI CCNNGG 4 cut(s) 33, 45, 124, 740
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 755
BseBI CCWGG 4 cut(s) 35, 125, 312, 363
BseDI CCNNGG 4 cut(s) 33, 45, 124, 740
BseGI GGATG 2 cut(s) 140, 444
BseJI GATNNNNATC 1 cut(s) 755
BseLI CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
BseMII CTCAG 2 cut(s) 343, 557
BseNI ACTGG 1 cut(s) 283
BsePI GCGCGC 1 cut(s) 774
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 3 cut(s) 11, 550, 689
Bsh1236I CGCG 2 cut(s) 774, 776
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
BshNI GGYRCC 1 cut(s) 557
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
BslFI GGGAC 5 cut(s) 92, 203, 522, 680, 707
BslI CCNNNNNNNGG 6 cut(s) 28, 40, 112, 301, 434, 687
BsmAI GTCTC 4 cut(s) 2, 89, 123, 238
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 5 cut(s) 92, 203, 522, 680, 707
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
Bso31I GGTCTC 2 cut(s) 2, 89
BsoBI CYCGRG 1 cut(s) 186
Bsp120I GGGCCC 1 cut(s) 30
Bsp1286I GDGCHC 3 cut(s) 34, 89, 378
Bsp143I GATC 3 cut(s) 225, 756, 769
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 9 cut(s) 5, 22, 89, 282, 367, 561, 650, 717, 843
BspANI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
BspCNI CTCAG 2 cut(s) 342, 556
BspFNI CGCG 2 cut(s) 774, 776
BspLI GGNNCC 5 cut(s) 32, 191, 494, 538, 559
BspMAI CTGCAG 1 cut(s) 29
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 777
BspQI GCTCTTC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 557
BspTNI GGTCTC 2 cut(s) 2, 89
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 234
BssECI CCNNGG 4 cut(s) 33, 45, 124, 740
BssHII GCGCGC 1 cut(s) 774
BssMI GATC 3 cut(s) 225, 756, 769
Bst2UI CCWGG 4 cut(s) 35, 125, 312, 363
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 3 cut(s) 492, 515, 862
BstC8I GCNNGC 4 cut(s) 89, 236, 689, 776
BstDEI CTNAG 4 cut(s) 329, 350, 543, 786
BstENI CCTNNNNNAGG 4 cut(s) 110, 299, 432, 685
BstF5I GGATG 2 cut(s) 140, 444
BstFNI CGCG 2 cut(s) 774, 776
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 3 cut(s) 716, 776, 778
BstKTI GATC 3 cut(s) 228, 759, 772
BstMAI GTCTC 4 cut(s) 2, 89, 123, 238
BstMBI GATC 3 cut(s) 225, 756, 769
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 471, 842, 848
BstNI CCWGG 4 cut(s) 35, 125, 312, 363
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 6 cut(s) 33, 44, 123, 310, 361, 739
BstSFI CTRYAG 2 cut(s) 25, 571
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 2 cut(s) 774, 776
BstV1I GCAGC 3 cut(s) 11, 550, 689
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
BtgZI GCGATG 2 cut(s) 414, 832
BtsCI GGATG 2 cut(s) 140, 444
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 4 cut(s) 89, 236, 689, 776
CaiI CAGNNNCTG 1 cut(s) 697
CfoI GCGC 3 cut(s) 716, 776, 778
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
CseI GACGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 180, 266
CviAII CATG 2 cut(s) 475, 817
CviQI GTAC 2 cut(s) 180, 266
DdeI CTNAG 4 cut(s) 329, 350, 543, 786
DpnI GATC 3 cut(s) 227, 758, 771
DpnII GATC 3 cut(s) 225, 756, 769
DraI TTTAAA 1 cut(s) 163
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 42, 364
Eam1104I CTCTTC 3 cut(s) 492, 515, 862
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 3 cut(s) 492, 515, 862
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 3 cut(s) 123, 315, 796
Eco24I GRGCYC 2 cut(s) 34, 89
Eco31I GGTCTC 2 cut(s) 2, 89
Eco47I GGWCC 4 cut(s) 19, 190, 304, 536
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 186
EcoNI CCTNNNNNAGG 4 cut(s) 110, 299, 432, 685
EcoO109I RGGNCCY 1 cut(s) 30
EcoRII CCWGG 4 cut(s) 33, 123, 310, 361
EcoT38I GRGCYC 2 cut(s) 34, 89
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 478, 820
FaiI YATR 4 cut(s) 476, 664, 710, 818
FaqI GGGAC 5 cut(s) 92, 203, 522, 680, 707
FatI CATG 2 cut(s) 474, 816
FauI CCCGC 2 cut(s) 96, 643
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
FokI GGATG 2 cut(s) 147, 451
FriOI GRGCYC 2 cut(s) 34, 89
Fsp4HI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
FspBI CTAG 3 cut(s) 107, 480, 792
GlaI GCGC 3 cut(s) 715, 775, 777
GluI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 8 cut(s) 32, 44, 116, 123, 315, 366, 548, 796
HapII CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
HgaI GACGC 1 cut(s) 343
HhaI GCGC 3 cut(s) 716, 776, 778
Hin1II CATG 2 cut(s) 478, 820
Hin6I GCGC 3 cut(s) 714, 774, 776
HinP1I GCGC 3 cut(s) 714, 774, 776
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 5 cut(s) 272, 291, 415, 611, 751
HpaI GTTAAC 1 cut(s) 874
HpaII CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 2 cut(s) 172, 874
Hpy188I TCNGA 3 cut(s) 142, 300, 756
Hpy188III TCNNGA 3 cut(s) 188, 724, 760
Hpy8I GTNNAC 2 cut(s) 172, 874
Hpy99I CGWCG 5 cut(s) 291, 323, 338, 359, 619
HpyAV CCTTC 5 cut(s) 295, 305, 506, 636, 807
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 3 cut(s) 264, 593, 876
HpyCH4V TGCA 4 cut(s) 27, 708, 735, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 471, 842, 848
HpyF3I CTNAG 4 cut(s) 329, 350, 543, 786
HpySE526I ACGT 3 cut(s) 264, 593, 876
Hsp92II CATG 2 cut(s) 478, 820
HspAI GCGC 3 cut(s) 714, 774, 776
KroI GCCGGC 1 cut(s) 234
KroNI GCCGGC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 225
KspAI GTTAAC 1 cut(s) 874
Kzo9I GATC 3 cut(s) 225, 756, 769
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 2 cut(s) 653, 674
Lsp1109I GCAGC 3 cut(s) 11, 550, 689
LweI GCATC 1 cut(s) 799
MaeI CTAG 3 cut(s) 107, 480, 792
MaeII ACGT 3 cut(s) 264, 593, 876
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 227, 758, 771
MboI GATC 3 cut(s) 225, 756, 769
MboII GAAGA 7 cut(s) 262, 272, 479, 502, 505, 774, 849
MhlI GDGCHC 3 cut(s) 34, 89, 378
MluCI AATT 3 cut(s) 152, 164, 881
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 331
MreI CGCCGGCG 1 cut(s) 234
MroNI GCCGGC 1 cut(s) 234
MseI TTAA 2 cut(s) 162, 873
MspA1I CMGCKG 4 cut(s) 24, 563, 650, 719
MspI CCGG 7 cut(s) 45, 92, 117, 193, 235, 412, 740
MspR9I CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
Mva1269I GAATGC 1 cut(s) 735
MvaI CCWGG 4 cut(s) 35, 125, 312, 363
MvnI CGCG 2 cut(s) 774, 776
MwoI GCNNNNNNNGC 3 cut(s) 471, 842, 848
NaeI GCCGGC 1 cut(s) 236
NciI CCSGG 2 cut(s) 46, 741
NdeII GATC 3 cut(s) 225, 756, 769
NgoMIV GCCGGC 1 cut(s) 234
NlaIII CATG 2 cut(s) 478, 820
NlaIV GGNNCC 5 cut(s) 32, 191, 494, 538, 559
NspI RCATGY 1 cut(s) 478
PauI GCGCGC 1 cut(s) 774
PceI AGGCCT 3 cut(s) 123, 315, 796
PciSI GCTCTTC 1 cut(s) 515
PctI GAATGC 1 cut(s) 735
PdiI GCCGGC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 272, 291, 611, 751
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 6 cut(s) 26, 368, 565, 679, 718, 844
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 876
Psp6I CCWGG 4 cut(s) 33, 123, 310, 361
PspGI CCWGG 4 cut(s) 33, 123, 310, 361
PspN4I GGNNCC 5 cut(s) 32, 191, 494, 538, 559
PspOMI GGGCCC 1 cut(s) 30
PspPI GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
PstI CTGCAG 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 697
PteI GCGCGC 1 cut(s) 774
RsaI GTAC 2 cut(s) 181, 267
RsaNI GTAC 2 cut(s) 180, 266
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 162, 873
SatI GCNGC 6 cut(s) 25, 367, 564, 678, 717, 843
Sau3AI GATC 3 cut(s) 225, 756, 769
Sau96I GGNCC 6 cut(s) 19, 30, 31, 190, 304, 536
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 6 cut(s) 35, 46, 125, 312, 363, 741
SduI GDGCHC 3 cut(s) 34, 89, 378
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 2 cut(s) 25, 571
SgrAI CRCCGGYG 1 cut(s) 234
SinI GGWCC 4 cut(s) 19, 190, 304, 536
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 3 cut(s) 152, 164, 881
SseBI AGGCCT 3 cut(s) 123, 315, 796
SsiI CCGC 9 cut(s) 5, 22, 89, 282, 367, 561, 650, 717, 843
SspMI CTAG 3 cut(s) 107, 480, 792
StuI AGGCCT 3 cut(s) 123, 315, 796
StyD4I CCNGG 6 cut(s) 33, 44, 123, 310, 361, 739
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 3 cut(s) 267, 596, 879
TaqI TCGA 6 cut(s) 111, 258, 289, 318, 357, 800
TaqII GACCGA 2 cut(s) 26, 524
TasI AATT 3 cut(s) 152, 164, 881
TatI WGTACW 1 cut(s) 179
TauI GCSGC 3 cut(s) 369, 719, 845
TfiI GAWTC 4 cut(s) 272, 291, 611, 751
Tru1I TTAA 2 cut(s) 162, 873
Tru9I TTAA 2 cut(s) 162, 873
TscAI CASTG 1 cut(s) 225
TseI GCWGC 3 cut(s) 24, 563, 677
TspDTI ATGAA 1 cut(s) 855
TspGWI ACGGA 2 cut(s) 147, 687
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 4 cut(s) 19, 190, 304, 536
XagI CCTNNNNNAGG 4 cut(s) 110, 299, 432, 685
XapI RAATTY 1 cut(s) 881
XceI RCATGY 1 cut(s) 478
XspI CTAG 3 cut(s) 107, 480, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.