Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003160.1

Orthogroup ID

OG0006509

Physical Location & Seq

Genomic Coordinates Forward (+)

148129 .. 151293

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003160.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atgttgagtgcacaaaactctggctatgtggagatggatcctactcgtcgctatggtcggtttgaagaagttcttggtaaaggagcaatgaaaacagtgtacaaggcaattgatgagcttcttgggatggaggtggcatggaatcaggtgaggttcagtgaagtgcttcgctcaccagaggatttgcaacggctctattcagaggtccacctcctcagcaccctcagtcatgactccattattcggttctacacctcgtggatcgatgttgatcacaaaacttttaacttcattaccgaaatgttcacttcagggacactaagagagtatagaaagaaatacccctggatagacatccgagccattaagaactgggcacgccagatccttcagggtcttgtttatttgcatggaaatgatcctccagtaattcatagagatctcaagtgtgacaacatctttgtcaatggacatcttgggcaagtcaaaattggtgatttagggcttgcagcaattctccgtggttcccaatgtgctcatagtgtaataggcactccagagttcatggcaccagagctatatgaggaagattacactgaactagttgatgtctattcatttggcatgtgtgttttagagatgcttacgtctgaatacccatatggtgaatgtgtcaaccctgcacaaatctacaagaaagtgacatcggggaagcttccaggagcattctaccggattcaagactttaaagcacaaggatttgttgcaaaatgcttagtaaatgcttccgagagattatcggcaaaagaattattgcttgatccatttctcgagtgcgataaaggtgaaccattgctattgggaaagctcagacatccaaagccatttttaaatgccaaagaaatagagaaactgcaattgcatgatgatccaaccaggactcacatgacaatcacgggaaagttgaattctgaagatgataccatctttcttagagttcagagtgctgataaggatggttcccacaggaacatatattttccttttgacatattaaacgacactccaattgatgttgcaaccgaaatggtgaaggaactggagatcattgattgggagccatttgaaattgcgaagatgattgaaggggagatatctgctctagtaccagattggaagactgaagcataccatacatttaattatcaagatgatgatgatggtcctcattatccctttcattctttctcctcctgctcttcgtctcagtcatcattctcaggcttgatgagttctcacaggattaatggaacgacaaatggttgtgatcacctccaaggtatgcctaacggaatcttaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

454

Amino Acids

51.7

Weight (kDa)

5.24

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58350
fragaria_vesca	FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320
malus_domestica	MD03G1053500.v1.1 MD11G1055100.v1.1
prunus_persica	Prupe.6G042600_v2.0.a1 Prupe.6G042600_v2.0.a1 Prupe.6G042600_v2.0.a1
pyrus_communis	pycom03g04240 pycom11g04490
rosa_chinensis	RchiOBHm_Chr5g0072661
rosa_laevigata	RLG00000036323
rosa_multiflora	Rmu_sc0003160.1_g000036 Rmu_sc0007778.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008470
rosa_rugosa	Rorug05G0419100
rosa_samantha	Rh5AG476100 Rh5BG496200 Rh5CG520000 Rh5DG508700
rosa_wichuraiana	Rw5G044210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	568
AclWI	GGATC	7 cut(s)	32, 45, 269, 379, 413, 815, 923
AcsI	RAATTY	1 cut(s)	967
AcuI	CTGAAG	4 cut(s)	294, 374, 993, 1203
AdeI	CACNNNGTG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	101, 1167
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflII	CTTAAG	1 cut(s)	1357
AgsI	TTSAA	5 cut(s)	65, 740, 967, 1127, 1145
AhlI	ACTAGT	1 cut(s)	601
AjnI	CCWGG	3 cut(s)	344, 718, 935
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	4 cut(s)	118, 577, 715, 868
AluI	AGCT	4 cut(s)	118, 577, 715, 868
Alw21I	GWGCWC	2 cut(s)	13, 538
Alw26I	GTCTC	1 cut(s)	1269
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	7 cut(s)	32, 45, 269, 379, 413, 815, 923
Ama87I	CYCGRG	1 cut(s)	830
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	967
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AseI	ATTAAT	1 cut(s)	1305
Asp700I	GAANNNNTTC	2 cut(s)	69, 165
AspS9I	GGNCC	2 cut(s)	205, 1223
AsuHPI	GGTGA	7 cut(s)	160, 165, 506, 677, 857, 1102, 1322
AvaI	CYCGRG	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	205, 1223
BaeGI	GKGCMC	2 cut(s)	13, 379
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	568
BauI	CACGAG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	1184
Bbv12I	GWGCWC	2 cut(s)	13, 538
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	5 cut(s)	28, 121, 992, 1010, 1214
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	3 cut(s)	346, 720, 937
BclI	TGATCA	2 cut(s)	271, 1327
BcoDI	GTCTC	1 cut(s)	1269
BcuI	ACTAGT	1 cut(s)	601
BfaI	CTAG	2 cut(s)	602, 1163
BfrI	CTTAAG	1 cut(s)	1357
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	3 cut(s)	346, 720, 937
Bme18I	GGWCC	2 cut(s)	205, 1223
BmeT110I	CYCGRG	1 cut(s)	830
BmgT120I	GGNCC	2 cut(s)	205, 1223
BmiI	GGNNCC	5 cut(s)	39, 526, 570, 1021, 1119
BmrFI	CCNGG	3 cut(s)	346, 720, 937
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	1184
BpmI	CTGGAG	3 cut(s)	408, 540, 1121
Bpu10I	CCTNAGC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	264
BsaBI	GATNNNNATC	2 cut(s)	270, 353
BsaJI	CCNNGG	3 cut(s)	344, 520, 1336
BsaWI	WCCGGW	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	3 cut(s)	377, 425, 1104
Bse3DI	GCAATG	2 cut(s)	93, 851
Bse8I	GATNNNNATC	2 cut(s)	270, 353
BseBI	CCWGG	3 cut(s)	346, 720, 937
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	344, 520, 1336
BseGI	GGATG	4 cut(s)	132, 354, 874, 1021
BseJI	GATNNNNATC	2 cut(s)	270, 353
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	2 cut(s)	93, 851
BseMII	CTCAG	5 cut(s)	229, 238, 883, 1280, 1293
BseNI	ACTGG	3 cut(s)	377, 425, 1104
BseRI	GAGGAG	2 cut(s)	203, 1240
BseSI	GKGCMC	2 cut(s)	13, 379
BseXI	GCAGC	1 cut(s)	521
BsgI	GTGCAG	1 cut(s)	666
BshNI	GGYRCC	1 cut(s)	568
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	2 cut(s)	13, 538
BsiHKCI	CYCGRG	1 cut(s)	830
BsiSI	CCGG	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	1269
BsmBI	CGTCTC	1 cut(s)	1269
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	830
Bsp1286I	GDGCHC	3 cut(s)	13, 379, 538
Bsp1407I	TGTACA	1 cut(s)	99
BspCNI	CTCAG	5 cut(s)	228, 237, 882, 1279, 1292
BspDI	ATCGAT	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	5 cut(s)	39, 526, 570, 1021, 1119
BspPI	GGATC	7 cut(s)	32, 45, 269, 379, 413, 815, 923
BspQI	GCTCTTC	1 cut(s)	1264
BspT107I	GGYRCC	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	1357
BsrDI	GCAATG	2 cut(s)	93, 851
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	377, 425, 1104
BssECI	CCNNGG	3 cut(s)	344, 520, 1336
BssSI	CACGAG	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	1336
Bst2BI	CACGAG	1 cut(s)	256
Bst2UI	CCWGG	3 cut(s)	346, 720, 937
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	1264
BstAFI	CTTAAG	1 cut(s)	1357
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	379, 507
BstDEI	CTNAG	8 cut(s)	215, 224, 320, 775, 869, 992, 1266, 1279
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	4 cut(s)	132, 354, 874, 1021
BstMAI	GTCTC	1 cut(s)	1269
BstNI	CCWGG	3 cut(s)	346, 720, 937
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	3 cut(s)	344, 718, 935
BstSLI	GKGCMC	2 cut(s)	13, 379
BstV1I	GCAGC	1 cut(s)	521
BstV2I	GAAGAC	1 cut(s)	1184
BstX2I	RGATCY	3 cut(s)	37, 384, 439
BstYI	RGATCY	3 cut(s)	37, 384, 439
Bsu15I	ATCGAT	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	4 cut(s)	132, 354, 874, 1021
BtsIMutI	CAGTG	3 cut(s)	102, 163, 594
Cac8I	GCNNGC	2 cut(s)	379, 507
CciI	TCATGA	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	205, 1223
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	100, 1166
CviAII	CATG	7 cut(s)	138, 230, 410, 565, 625, 923, 946
CviQI	GTAC	2 cut(s)	100, 1166
DdeI	CTNAG	8 cut(s)	215, 224, 320, 775, 869, 992, 1266, 1279
DraI	TTTAAA	2 cut(s)	748, 891
DraIII	CACNNNGTG	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	1264
EarI	CTCTTC	1 cut(s)	1264
Eco130I	CCWWGG	1 cut(s)	1336
Eco32I	GATATC	1 cut(s)	1155
Eco47I	GGWCC	2 cut(s)	205, 1223
Eco57I	CTGAAG	4 cut(s)	294, 374, 993, 1203
Eco88I	CYCGRG	1 cut(s)	830
EcoRI	GAATTC	1 cut(s)	967
EcoRII	CCWGG	3 cut(s)	344, 718, 935
EcoRV	GATATC	1 cut(s)	1155
EcoT14I	CCWWGG	1 cut(s)	1336
ErhI	CCWWGG	1 cut(s)	1336
Esp3I	CGTCTC	1 cut(s)	1269
FaeI	CATG	7 cut(s)	141, 233, 413, 568, 628, 926, 949
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	7 cut(s)	137, 229, 409, 564, 624, 922, 945
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	2 cut(s)	271, 1327
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	4 cut(s)	139, 341, 861, 1028
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	602, 1163
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	3 cut(s)	408, 540, 1121
HapII	CCGG	1 cut(s)	733
Hin1II	CATG	7 cut(s)	141, 233, 413, 568, 628, 926, 949
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	5 cut(s)	142, 233, 736, 940, 1353
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	7 cut(s)	160, 165, 506, 677, 857, 1102, 1322
Hpy166II	GTNNAC	6 cut(s)	11, 100, 208, 306, 676, 848
Hpy188I	TCNGA	7 cut(s)	202, 359, 652, 790, 872, 973, 1002
Hpy188III	TCNNGA	5 cut(s)	230, 557, 740, 830, 1208
Hpy8I	GTNNAC	6 cut(s)	11, 100, 208, 306, 676, 848
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	3 cut(s)	398, 1087, 1139
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	9 cut(s)	11, 187, 409, 509, 683, 767, 916, 922, 1079
HpyF3I	CTNAG	8 cut(s)	215, 224, 320, 775, 869, 992, 1266, 1279
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	7 cut(s)	141, 233, 413, 568, 628, 926, 949
Ksp22I	TGATCA	2 cut(s)	271, 1327
LguI	GCTCTTC	1 cut(s)	1264
LmnI	GCTCC	3 cut(s)	83, 722, 1117
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	2 cut(s)	602, 1163
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	2 cut(s)	449, 700
MboII	GAAGA	6 cut(s)	77, 599, 986, 1147, 1189, 1251
MfeI	CAATTG	3 cut(s)	108, 917, 1068
MflI	RGATCY	3 cut(s)	37, 384, 439
MhlI	GDGCHC	3 cut(s)	13, 379, 538
MlyI	GAGTC	2 cut(s)	227, 934
MmeI	TCCRAC	1 cut(s)	956
MroXI	GAANNNNTTC	2 cut(s)	69, 165
MseI	TTAA	9 cut(s)	285, 366, 747, 890, 1055, 1200, 1305, 1358, 1363
MslI	CAYNNNNRTG	1 cut(s)	414
MspCI	CTTAAG	1 cut(s)	1357
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	3 cut(s)	346, 720, 937
MunI	CAATTG	3 cut(s)	108, 917, 1068
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	3 cut(s)	346, 720, 937
NdeI	CATATG	1 cut(s)	661
NlaIII	CATG	7 cut(s)	141, 233, 413, 568, 628, 926, 949
NlaIV	GGNNCC	5 cut(s)	39, 526, 570, 1021, 1119
NmuCI	GTSAC	2 cut(s)	449, 700
NspI	RCATGY	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	830
PagI	TCATGA	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	1264
PctI	GAATGC	1 cut(s)	725
PdmI	GAANNNNTTC	2 cut(s)	69, 165
PfeI	GAWTC	3 cut(s)	142, 736, 1353
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	227, 934
PpsI	GAGTC	2 cut(s)	227, 934
PshBI	ATTAAT	1 cut(s)	1305
Psp6I	CCWGG	3 cut(s)	344, 718, 935
PspGI	CCWGG	3 cut(s)	344, 718, 935
PspN4I	GGNNCC	5 cut(s)	39, 526, 570, 1021, 1119
PspPI	GGNCC	2 cut(s)	205, 1223
PsuI	RGATCY	3 cut(s)	37, 384, 439
RsaI	GTAC	2 cut(s)	101, 1167
RsaNI	GTAC	2 cut(s)	100, 1166
RseI	CAYNNNNRTG	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	1264
SaqAI	TTAA	9 cut(s)	285, 366, 747, 890, 1055, 1200, 1305, 1358, 1363
SatI	GCNGC	1 cut(s)	510
Sau96I	GGNCC	2 cut(s)	205, 1223
SchI	GAGTC	2 cut(s)	227, 934
ScrFI	CCNGG	3 cut(s)	346, 720, 937
SduI	GDGCHC	3 cut(s)	13, 379, 538
SfaNI	GCATC	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	830
SinI	GGWCC	2 cut(s)	205, 1223
SlaI	CTCGAG	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	3 cut(s)	443, 830, 1357
SmoI	CTYRAG	3 cut(s)	443, 830, 1357
SpeI	ACTAGT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	602, 1163
StyD4I	CCNGG	3 cut(s)	344, 718, 935
StyI	CCWWGG	1 cut(s)	1336
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	2 cut(s)	264, 831
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	142, 736, 1353
Tru1I	TTAA	9 cut(s)	285, 366, 747, 890, 1055, 1200, 1305, 1358, 1363
Tru9I	TTAA	9 cut(s)	285, 366, 747, 890, 1055, 1200, 1305, 1358, 1363
TscAI	CASTG	3 cut(s)	102, 163, 601
TseFI	GTSAC	2 cut(s)	449, 700
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	2 cut(s)	449, 700
TspDTI	ATGAA	6 cut(s)	104, 280, 422, 553, 606, 1229
TspGWI	ACGGA	2 cut(s)	509, 1365
TspRI	CASTG	3 cut(s)	102, 163, 601
Vha464I	CTTAAG	1 cut(s)	1357
VneI	GTGCAC	1 cut(s)	9
VpaK11BI	GGWCC	2 cut(s)	205, 1223
VspI	ATTAAT	1 cut(s)	1305
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	1 cut(s)	628
XhoI	CTCGAG	1 cut(s)	830
XmnI	GAANNNNTTC	2 cut(s)	69, 165
XspI	CTAG	2 cut(s)	602, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.