Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006509

Physical Location & Seq

Genomic Coordinates Forward (+)

58317087 .. 58318452

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0419100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGGATTACCTACCCGAAGATGTGATAGTTCAAATCCTGCAAAGGTTACCAATCAAATCCCTAATTCGCTTCACCTCCGTTTCGAAACGCTGGCGTTTCATCATACTGTCCGACCCAAACTTTGCCAAATCCCAATTCCAGGAAACCAAGAGTCACAGAGTCCTCTTCTGCCTCTACTGCAAAGAATCCCGTGCCTTGGAGACGCTGTGGTCCACCGGAGAAAATTCTACTGACTGCAGAAAGCTCAGATGCCCATTCAAGCAGCCGGACGATGAACTCTACTCATTCTCCTACTGCAATGGTTTAGTGTGTGCAGCTCTTTGTGATCGAAACCGGATGGGTTTGGAGATTTATATCTGGAACCCATCAACTCAGTTCTTCAAGAAACTACCCGCTTCTCCCTTACGATTTCCATTTCTACGCTGTTATGATTTTGGCTACTTGTCAGCCACTGGCGACTACAAAGTTCTCATAGGCAACCTCTTCTCATCGAACACCAACCACCACATCTTCTCATCGAACACCAACATTTGGAAAAGGATCAAGTTATTGAATTTGGCTTTATTATATTGGTGGACAAAATCCAATTTGAATGACCCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

202

Amino Acids

23.8

Weight (kDa)

9.21

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 39	8.5e-09	F-box-like
F-box	PF00646	5 - 42	1.1e-10	F-box domain
FBA_3	PF08268	56 - 183	5.9e-08	F-box associated beta propeller domain
FBA_1	PF07734	85 - 184	9e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58350
fragaria_vesca	FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320 FvH4_3g40320
malus_domestica	MD03G1053500.v1.1 MD11G1055100.v1.1
prunus_persica	Prupe.6G042600_v2.0.a1 Prupe.6G042600_v2.0.a1 Prupe.6G042600_v2.0.a1
pyrus_communis	pycom03g04240 pycom11g04490
rosa_chinensis	RchiOBHm_Chr5g0072661
rosa_laevigata	RLG00000036323
rosa_multiflora	Rmu_sc0003160.1_g000036 Rmu_sc0007778.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008470
rosa_rugosa	Rorug05G0419100
rosa_samantha	Rh5AG476100 Rh5BG496200 Rh5CG520000 Rh5DG508700
rosa_wichuraiana	Rw5G044210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AccB7I	CCANNNNNTGG	1 cut(s)	534
AciI	CCGC	2 cut(s)	5, 396
AclWI	GGATC	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	226, 556
AfiI	CCNNNNNNNGG	3 cut(s)	142, 199, 534
AgsI	TTSAA	5 cut(s)	35, 262, 385, 556, 595
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	247, 320
AluI	AGCT	2 cut(s)	247, 320
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	551
AlwNI	CAGNNNCTG	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	265, 317
ApoI	RAATTY	2 cut(s)	226, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	277, 329
BccI	CCATC	2 cut(s)	334, 376
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	266, 318
BlsI	GCNGC	2 cut(s)	267, 319
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	198, 602
BsaWI	WCCGGW	2 cut(s)	218, 336
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 275, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 199, 534
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	198, 602
BseGI	GGATG	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	3 cut(s)	142, 199, 534
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	262, 389
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	277, 329
BsgI	GTGCAG	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	219, 269, 337
BslI	CCNNNNNNNGG	3 cut(s)	142, 199, 534
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	328, 543
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	2 cut(s)	5, 396
BspCNI	CTCAG	2 cut(s)	261, 388
BspLI	GGNNCC	1 cut(s)	365
BspMAI	CTGCAG	1 cut(s)	242
BspPI	GGATC	1 cut(s)	551
BspT104I	TTCGAA	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	198, 602
BssMI	GATC	2 cut(s)	328, 543
BssT1I	CCWWGG	2 cut(s)	198, 602
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	111
Bst6I	CTCTTC	2 cut(s)	173, 491
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	248, 375
BstDSI	CCRYGG	1 cut(s)	602
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	2 cut(s)	331, 546
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	328, 543
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	2 cut(s)	277, 329
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	213
CseI	GACGC	1 cut(s)	214
CviAII	CATG	1 cut(s)	603
CviJI	RGCY	6 cut(s)	247, 268, 320, 441, 452, 563
CviKI_1	RGCY	6 cut(s)	247, 268, 320, 441, 452, 563
DdeI	CTNAG	2 cut(s)	248, 375
DpnI	GATC	2 cut(s)	330, 545
DpnII	GATC	2 cut(s)	328, 543
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	173, 491
EarI	CTCTTC	2 cut(s)	173, 491
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	198, 602
Eco47I	GGWCC	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	48
EcoO65I	GGTNACC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	198, 602
ErhI	CCWWGG	2 cut(s)	198, 602
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	606
FaiI	YATR	6 cut(s)	107, 357, 432, 476, 571, 604
FatI	CATG	1 cut(s)	602
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	266, 318
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	266, 318
GluI	GCNGC	2 cut(s)	266, 318
HapII	CCGG	3 cut(s)	219, 269, 337
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	606
HinfI	GANTC	3 cut(s)	154, 162, 188
HpaII	CCGG	3 cut(s)	219, 269, 337
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	216, 579
Hpy188I	TCNGA	2 cut(s)	115, 251
Hpy188III	TCNNGA	2 cut(s)	361, 385
Hpy8I	GTNNAC	2 cut(s)	216, 579
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	5 cut(s)	43, 183, 240, 300, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	248, 375
Hsp92II	CATG	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	328, 543
LpnPI	CCDG	9 cut(s)	53, 79, 128, 155, 232, 282, 346, 350, 441
Lsp1109I	GCAGC	2 cut(s)	277, 329
LweI	GCATC	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	48, 155
MalI	GATC	2 cut(s)	330, 545
MboI	GATC	2 cut(s)	328, 543
MboII	GAAGA	5 cut(s)	32, 160, 373, 478, 505
MluCI	AATT	5 cut(s)	66, 137, 226, 556, 589
MlyI	GAGTC	2 cut(s)	163, 171
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	88, 176, 185, 494
MspI	CCGG	3 cut(s)	219, 269, 337
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	602
NdeII	GATC	2 cut(s)	328, 543
NlaIII	CATG	1 cut(s)	606
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	534
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	267, 319
PleI	GAGTC	2 cut(s)	162, 170
PpsI	GAGTC	2 cut(s)	162, 170
Psp6I	CCWGG	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	455
SatI	GCNGC	2 cut(s)	266, 318
Sau3AI	GATC	2 cut(s)	328, 543
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	2 cut(s)	163, 171
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	6 cut(s)	15, 50, 80, 249, 322, 486
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	5 cut(s)	66, 137, 226, 556, 589
SsiI	CCGC	2 cut(s)	5, 396
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	198, 602
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	4 cut(s)	86, 331, 494, 521
TasI	AATT	5 cut(s)	66, 137, 226, 556, 589
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	265, 317
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	91, 291
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	226, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.