Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003198.1

Orthogroup ID

OG0023095

Physical Location & Seq

Genomic Coordinates Reverse (-)

48794 .. 50875

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003198.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgaacccagggagaattgggtatcccacatatgagattctatggctcctgccaagcaacatactactagatgatgatatggttgcaaatgtttctgattttggcattgcaaaactcttaggcggaagagattccatgactcaaaccatgacccttgcgacaattggatatatggctccagaatatggaatggaaggaatggttactacaagaggggatgtgtacagttttggtattgtgcttctggaaacattcacaaaaaggaagccaacagatgagatgtttgacggggaaatgagtttaaagaaacgggtggcaaattcactatttgcagatgtaatagttgaagttgttgatggaatttacttgggattgaagaagatgagcttttgtcagcaagagagagtacttaccaaccattatgagatttgctcttgcttgttgtttagaatcaccggaagtatgcaagaggctctagccacgctgaacaaaatcaggatcaagttcttgatggatgctgcaggaggtctcctgttgaaccatcgtcttattgctgccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

187

Amino Acids

20.85

Weight (kDa)

5.41

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023095)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003198.1_g000014 Rmu_sc0012599.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042220
rosa_samantha	Rh5DG273100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	2 cut(s)	319, 360
AfaI	GTAC	2 cut(s)	224, 408
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	347, 376, 538
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	1 cut(s)	387
AluI	AGCT	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	518, 554
ApoI	RAATTY	2 cut(s)	319, 360
Asp700I	GAANNNNTTC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	505, 541
BccI	CCATC	3 cut(s)	350, 505, 549
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	68, 476
BfmI	CTRYAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	519, 555
BlsI	GCNGC	2 cut(s)	520, 556
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	47, 177
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	1 cut(s)	505
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	7, 8
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	7, 8
BseGI	GGATG	2 cut(s)	223, 520
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	505, 541
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	533
Bso31I	GGTCTC	1 cut(s)	533
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	47, 177
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	506
BspTNI	GGTCTC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	7, 8
BssMI	GATC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	223, 520
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	505, 541
BsuI	GTATCC	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	223, 520
Csp6I	GTAC	2 cut(s)	223, 407
CviAII	CATG	2 cut(s)	136, 148
CviJI	RGCY	6 cut(s)	46, 176, 268, 387, 473, 479
CviKI_1	RGCY	6 cut(s)	46, 176, 268, 387, 473, 479
CviQI	GTAC	2 cut(s)	223, 407
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
DraI	TTTAAA	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	7
FaeI	CATG	2 cut(s)	139, 151
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	2 cut(s)	135, 147
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	519, 555
FokI	GGATG	2 cut(s)	230, 527
Fsp4HI	GCNGC	2 cut(s)	519, 555
FspBI	CTAG	2 cut(s)	68, 476
GluI	GCNGC	2 cut(s)	519, 555
GsuI	CTGGAG	1 cut(s)	162
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	2 cut(s)	139, 151
HinfI	GANTC	4 cut(s)	37, 131, 139, 450
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	4 cut(s)	179, 245, 496, 508
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	86, 110, 332, 466, 521
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	139, 151
Kzo9I	GATC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	51, 181
LpnPI	CCDG	8 cut(s)	21, 62, 192, 230, 469, 481, 507, 545
Lsp1109I	GCAGC	2 cut(s)	505, 541
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	2 cut(s)	68, 476
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	3 cut(s)	138, 388, 391
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	4 cut(s)	15, 162, 319, 360
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	206, 463, 518
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	2 cut(s)	139, 151
NlaIV	GGNNCC	2 cut(s)	47, 177
PasI	CCCWGGG	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	37, 131, 450
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	520, 556
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	47, 177
PstI	CTGCAG	1 cut(s)	523
RsaI	GTAC	2 cut(s)	224, 408
RsaNI	GTAC	2 cut(s)	223, 407
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	519, 555
Sau3AI	GATC	1 cut(s)	498
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	2 cut(s)	389, 529
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	519
Sse9I	AATT	4 cut(s)	15, 162, 319, 360
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	68, 476
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	227
TasI	AATT	4 cut(s)	15, 162, 319, 360
TatI	WGTACW	2 cut(s)	222, 406
TfiI	GAWTC	3 cut(s)	37, 131, 450
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	2 cut(s)	518, 554
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	319, 360
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	68, 476
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.