Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0023095

Physical Location & Seq

Genomic Coordinates Forward (+)

60318616 .. 60320698

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACCCCAGGGAGAATTGGGTATCCCAAATATGAGATTCTATGGCTCCTGCCAAGCAACATACTACTAGATGATGATATGGTTGCAAATGTTTCTGATTTTGGCATTGCAAAACTCTTGGGCGGAAAAGATTCTATGACTCAAACCATGACCCTTGCGACAATTGGATATATGGCTCCAGAGTATGGAATGGAAGGAATGGTTACTACAAGAGGGGATGTGTACAGTTTTGGTATTGTGCTTCTGGAAACATTCACAAAAAGGAAGCCAACAGATGAGATGTTTGACGGGGAAATGAGTTTAAAGAAACGGGTGGCAAATTCACTATTTGCAGATGCAATAGTTGAAGTTGATGGAATTTACTTGGGATTGAAGAAGATGAGCTTTTGTCAGCAAGAGAGAGTACTTACCAACCATTATGAGATTTGCTCTTGCTTGTTGTGTAGAATCACCGGAAGTATGCAAGAGGCCCTAGCCACCCTGAACAAAATCAAGATCAAGTTTTTGATGGATGCTGCAGGAGGTCTCCTGTTGAACCATCGTCTTATTGCTGCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

20.64

Weight (kDa)

5.71

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	18 - 94	2.4e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 96	2.5e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0023095)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003198.1_g000014 Rmu_sc0012599.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042220
rosa_samantha	Rh5DG273100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	319, 357
AfaI	GTAC	2 cut(s)	224, 405
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	347, 373, 535
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	1 cut(s)	384
AluI	AGCT	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	530
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	515, 551
ApoI	RAATTY	2 cut(s)	319, 357
Asp700I	GAANNNNTTC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	502, 538
BccI	CCATC	3 cut(s)	347, 502, 546
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	2 cut(s)	68, 473
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	516, 552
BlsI	GCNGC	2 cut(s)	517, 553
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	47, 177
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	2 cut(s)	325, 502
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	7, 8
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	7, 8
BseGI	GGATG	2 cut(s)	223, 517
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	502, 538
BshFI	GGCC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	530
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	495
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	47, 177
BspMAI	CTGCAG	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	7, 8
BssMI	GATC	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	223, 517
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	1 cut(s)	495
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	502, 538
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	470
BtsCI	GGATG	2 cut(s)	223, 517
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	223, 404
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	46, 176, 268, 384, 470, 476
CviKI_1	RGCY	6 cut(s)	46, 176, 268, 384, 470, 476
CviQI	GTAC	2 cut(s)	223, 404
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
DraI	TTTAAA	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	7
FaeI	CATG	1 cut(s)	151
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	516, 552
FokI	GGATG	2 cut(s)	230, 524
Fsp4HI	GCNGC	2 cut(s)	516, 552
FspBI	CTAG	2 cut(s)	68, 473
GluI	GCNGC	2 cut(s)	516, 552
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	470
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	4 cut(s)	37, 131, 139, 447
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	3 cut(s)	179, 245, 493
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	6 cut(s)	86, 110, 332, 338, 463, 518
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	495
LmnI	GCTCC	2 cut(s)	51, 181
LpnPI	CCDG	8 cut(s)	21, 62, 192, 230, 466, 494, 504, 542
Lsp1109I	GCAGC	2 cut(s)	502, 538
LweI	GCATC	2 cut(s)	325, 502
MaeI	CTAG	2 cut(s)	68, 473
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	497
MboI	GATC	1 cut(s)	495
MboII	GAAGA	2 cut(s)	385, 388
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	4 cut(s)	15, 162, 319, 357
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	206, 460, 515
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	302
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	47, 177
PasI	CCCWGGG	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	37, 131, 447
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	517, 553
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	47, 177
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	224, 405
RsaNI	GTAC	2 cut(s)	223, 404
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	516, 552
Sau3AI	GATC	1 cut(s)	495
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	2 cut(s)	386, 526
SfaNI	GCATC	2 cut(s)	325, 502
SfcI	CTRYAG	1 cut(s)	516
Sse9I	AATT	4 cut(s)	15, 162, 319, 357
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	2 cut(s)	68, 473
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	227
TasI	AATT	4 cut(s)	15, 162, 319, 357
TatI	WGTACW	2 cut(s)	222, 403
TfiI	GAWTC	3 cut(s)	37, 131, 447
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseI	GCWGC	2 cut(s)	515, 551
Van91I	CCANNNNNTGG	1 cut(s)	185
XapI	RAATTY	2 cut(s)	319, 357
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	68, 473
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.