Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003221.1

Orthogroup ID

OG0022437

Physical Location & Seq

Genomic Coordinates Forward (+)

268815 .. 272983

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggagttggagcaagtattatcagatctggatagcgaagatgaagctgatgatgacgttgcagatcttgaagatcggaggatgcttgatgattttgtagatgttaccaaagatgaaaagcagctgatgcacctttggaactcgtttgtgcggaggcaaagtgtgctggcagatgctcatgttccctgggcatgtgaggcattttcaagacttcatggacaggagctagtctcctctccagctcttttctggtgttggagattattcatggtcaaactttggaatcacgattatattaccctcacccctttgttacatagagagagaagtcataggagacttcgctggagtcccgtcaccggttgttggaatccggtcaatgatcgcgggaatccggtcaccggctgccacctaccggacttctctgaaaacctcgctggaggttcccaaagaggtcgtcggaaatctcataggtcgccggaaagaaatggcgttggaggtggtcggaaacctctcctaaacctcgctgccaccactgtttctgccttgttgcgtcgtcctggcggcgaatcgtcgtgtatcaccaccacagaaggaagaggcgactcgattgggaccagtggtgaggccaaaggtggccggacggccgggatatggtcggaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0006139 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009987 GO:0010048 GO:0010468 GO:0010556 GO:0017053 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071514 GO:0071704 GO:0080090 GO:0090568 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VEFS-Box

Protein Analysis

222

Amino Acids

24.92

Weight (kDa)

6.07

Isoelectric Point (pI)

64.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VEFS-Box	PF09733	1 - 100	5e-43	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022437)

Species	Orthologous Gene IDs
malus_domestica	MD11G1274400.v1.1
rosa_multiflora	Rmu_sc0003221.1_g000059
rosa_samantha	Rh5AG202000 Rh5CG220500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	387
AciI	CCGC	3 cut(s)	151, 387, 564
AcoI	YGGCCR	2 cut(s)	637, 645
AfiI	CCNNNNNNNGG	5 cut(s)	359, 366, 401, 415, 654
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	71, 207
AjnI	CCWGG	2 cut(s)	185, 559
AluBI	AGCT	4 cut(s)	47, 124, 226, 242
AluI	AGCT	4 cut(s)	47, 124, 226, 242
Alw26I	GTCTC	2 cut(s)	235, 331
AoxI	GGCC	3 cut(s)	627, 637, 645
ApeKI	GCWGC	3 cut(s)	121, 405, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	442, 474
AsiGI	ACCGGT	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	615
AsuC2I	CCSGG	1 cut(s)	649
AsuHPI	GGTGA	5 cut(s)	295, 349, 391, 574, 635
AvaII	GGWCC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	133, 392, 514
BceAI	ACGGC	1 cut(s)	660
BciT130I	CCWGG	2 cut(s)	187, 561
BcnI	CCSGG	1 cut(s)	649
BcoDI	GTCTC	2 cut(s)	235, 331
BfaI	CTAG	1 cut(s)	227
BglII	AGATCT	2 cut(s)	25, 64
BisI	GCNGC	4 cut(s)	122, 406, 528, 565
BlsI	GCNGC	4 cut(s)	123, 407, 529, 566
Bme1390I	CCNGG	3 cut(s)	187, 561, 649
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	2 cut(s)	445, 616
BmrFI	CCNGG	3 cut(s)	187, 561, 649
BmsI	GCATC	3 cut(s)	72, 117, 163
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	3 cut(s)	222, 367, 459
BpuMI	CCSGG	1 cut(s)	649
BsaJI	CCNNGG	2 cut(s)	185, 186
BsaWI	WCCGGW	4 cut(s)	359, 373, 394, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	5 cut(s)	359, 366, 401, 415, 654
Bse118I	RCCGGY	2 cut(s)	359, 401
Bse1I	ACTGG	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	187, 561
BseDI	CCNNGG	2 cut(s)	185, 186
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	5 cut(s)	359, 366, 401, 415, 654
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	645
BseXI	GCAGC	3 cut(s)	133, 392, 514
Bsh1236I	CGCG	1 cut(s)	387
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	629, 639, 647
BshTI	ACCGGT	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	648
BsiSI	CCGG	8 cut(s)	360, 374, 395, 402, 416, 479, 640, 648
BslFI	GGGAC	2 cut(s)	336, 628
BslI	CCNNNNNNNGG	5 cut(s)	359, 366, 401, 415, 654
BsmAI	GTCTC	2 cut(s)	235, 331
BsmFI	GGGAC	2 cut(s)	336, 628
BsnI	GGCC	3 cut(s)	629, 639, 647
Bsp143I	GATC	4 cut(s)	25, 64, 73, 382
BspACI	CCGC	3 cut(s)	151, 387, 564
BspANI	GGCC	3 cut(s)	629, 639, 647
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	445, 616
BsrFI	RCCGGY	2 cut(s)	359, 401
BsrI	ACTGG	1 cut(s)	618
BssAI	RCCGGY	2 cut(s)	359, 401
BssECI	CCNNGG	2 cut(s)	185, 186
BssMI	GATC	4 cut(s)	25, 64, 73, 382
Bst2UI	CCWGG	2 cut(s)	187, 561
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	592
BstAPI	GCANNNNNTGC	2 cut(s)	127, 163
BstC8I	GCNNGC	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	28, 67, 76, 385
BstMAI	GTCTC	2 cut(s)	235, 331
BstMBI	GATC	4 cut(s)	25, 64, 73, 382
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 163, 197
BstNI	CCWGG	2 cut(s)	187, 561
BstNSI	RCATGY	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	397
BstSCI	CCNGG	3 cut(s)	185, 559, 647
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	133, 392, 514
BstX2I	RGATCY	2 cut(s)	25, 64
BstYI	RGATCY	2 cut(s)	25, 64
BstZI	CGGCCG	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	629, 639, 647
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	534, 625
Cac8I	GCNNGC	1 cut(s)	168
Cfr10I	RCCGGY	2 cut(s)	359, 401
Cfr13I	GGNCC	1 cut(s)	615
CseI	GACGC	1 cut(s)	542
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	4 cut(s)	179, 192, 215, 268
CviJI	RGCY	8 cut(s)	47, 124, 226, 242, 405, 629, 639, 647
CviKI_1	RGCY	8 cut(s)	47, 124, 226, 242, 405, 629, 639, 647
DpnI	GATC	4 cut(s)	27, 66, 75, 384
DpnII	GATC	4 cut(s)	25, 64, 73, 382
EaeI	YGGCCR	2 cut(s)	637, 645
EagI	CGGCCG	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
EclXI	CGGCCG	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	615
Eco52I	CGGCCG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	185, 559
FaeI	CATG	4 cut(s)	182, 195, 218, 271
FaiI	YATR	9 cut(s)	180, 193, 216, 269, 294, 318, 333, 471, 655
FaqI	GGGAC	2 cut(s)	336, 628
FatI	CATG	4 cut(s)	178, 191, 214, 267
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	4 cut(s)	122, 406, 528, 565
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	4 cut(s)	122, 406, 528, 565
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	4 cut(s)	122, 406, 528, 565
GsuI	CTGGAG	3 cut(s)	222, 367, 459
HaeIII	GGCC	3 cut(s)	629, 639, 647
HapII	CCGG	8 cut(s)	360, 374, 395, 402, 416, 479, 640, 648
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	182, 195, 218, 271
HinfI	GANTC	6 cut(s)	283, 349, 370, 391, 569, 605
HpaII	CCGG	8 cut(s)	360, 374, 395, 402, 416, 479, 640, 648
HphI	GGTGA	5 cut(s)	295, 349, 391, 574, 635
Hpy188I	TCNGA	6 cut(s)	25, 78, 427, 462, 507, 661
Hpy188III	TCNNGA	4 cut(s)	29, 68, 207, 287
Hpy99I	CGWCG	3 cut(s)	462, 558, 577
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	62, 130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 163, 197
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	182, 195, 218, 271
Kzo9I	GATC	4 cut(s)	25, 64, 73, 382
LmnI	GCTCC	2 cut(s)	10, 223
Lsp1109I	GCAGC	3 cut(s)	133, 392, 514
LweI	GCATC	3 cut(s)	72, 117, 163
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	4 cut(s)	103, 312, 355, 397
MalI	GATC	4 cut(s)	27, 66, 75, 384
MboI	GATC	4 cut(s)	25, 64, 73, 382
MboII	GAAGA	3 cut(s)	50, 83, 609
MflI	RGATCY	2 cut(s)	25, 64
MlyI	GAGTC	2 cut(s)	358, 599
MmeI	TCCRAC	6 cut(s)	236, 347, 440, 475, 485, 639
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	8 cut(s)	360, 374, 395, 402, 416, 479, 640, 648
MspR9I	CCNGG	3 cut(s)	187, 561, 649
MvaI	CCWGG	2 cut(s)	187, 561
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	127, 163, 197
NciI	CCSGG	1 cut(s)	649
NdeII	GATC	4 cut(s)	25, 64, 73, 382
NlaIII	CATG	4 cut(s)	182, 195, 218, 271
NlaIV	GGNNCC	2 cut(s)	445, 616
NmuCI	GTSAC	2 cut(s)	355, 397
NspI	RCATGY	1 cut(s)	195
PasI	CCCWGGG	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	283, 370, 391, 569
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	123, 407, 529, 566
PleI	GAGTC	2 cut(s)	357, 599
PpsI	GAGTC	2 cut(s)	357, 599
Psp6I	CCWGG	2 cut(s)	185, 559
PspEI	GGTNACC	1 cut(s)	397
PspGI	CCWGG	2 cut(s)	185, 559
PspN4I	GGNNCC	2 cut(s)	445, 616
PspPI	GGNCC	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	25, 64
PvuII	CAGCTG	1 cut(s)	124
SatI	GCNGC	4 cut(s)	122, 406, 528, 565
Sau3AI	GATC	4 cut(s)	25, 64, 73, 382
Sau96I	GGNCC	1 cut(s)	615
SchI	GAGTC	2 cut(s)	358, 599
ScrFI	CCNGG	3 cut(s)	187, 561, 649
SfaNI	GCATC	3 cut(s)	72, 117, 163
SinI	GGWCC	1 cut(s)	615
SsiI	CCGC	3 cut(s)	151, 387, 564
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	185, 559, 647
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	608
TauI	GCSGC	1 cut(s)	567
TfiI	GAWTC	4 cut(s)	283, 370, 391, 569
TscAI	CASTG	2 cut(s)	541, 625
TseFI	GTSAC	2 cut(s)	355, 397
TseI	GCWGC	3 cut(s)	121, 405, 527
Tsp45I	GTSAC	2 cut(s)	355, 397
TspDTI	ATGAA	4 cut(s)	57, 129, 203, 256
TspRI	CASTG	2 cut(s)	541, 625
VpaK11BI	GGWCC	1 cut(s)	615
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.