Rmu_sc0003226.1_g000007

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0031251
Physical Location & Seq
Reverse (-)
23983 .. 26258
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000007.1.cds

Sequence Viewer

Length: 633 bp
atggaagcttcttcaggtttaacgacaacttctgaatctatcaaccacagtgatgatggcgaaaagtatgctaatggtgtcaactggcatgaactggcatttggaataactccaactgattcgatgtacaccatgaactgctccgatgaaaataacttctcacaaggacatctcattccctatggaaatattgagctttgtccatctgctggaattttgaattatggacagctactgacccgccggtatcgcgcccatacttcgccgtcggggtcgcacgcttggttctccatcggggtcgcacgcttggttcgccgtcagggtcgcgcccttgcttctcagccgggtcgcctgcttgcttcgccgccgggtagcccccttgcttcgtcgcctggtcgcccccttgcttcgtcgccgggtcgcgcccctgctttgccacctggttgcacacttggttcgtcgccgggattgtgctcttgcttcgccgccggagtccttgcttctcagcagggtggcctgcttgcttcgccgccgggtcgcgcacttggttcactgctgggattgtgctcttgcttcgccgccggagtcacgagcttgcttcacctctggggtcgcgctcgcgcccttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

210

Amino Acids

21.66

Weight (kDa)

8.79

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031251)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003226.1_g000007
rosa_samantha Rh6BG033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
AciI CCGC 5 cut(s) 241, 365, 486, 530, 579
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 391, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 4 cut(s) 8, 196, 232, 594
AluI AGCT 4 cut(s) 8, 196, 232, 594
Alw21I GWGCWC 2 cut(s) 476, 569
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
AsuC2I CCSGG 5 cut(s) 345, 369, 417, 465, 534
AsuHPI GGTGA 1 cut(s) 593
BauI CACGAG 1 cut(s) 589
Bbv12I GWGCWC 2 cut(s) 476, 569
BccI CCATC 3 cut(s) 50, 211, 299
BceAI ACGGC 2 cut(s) 250, 300
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 393, 441
BcnI CCSGG 5 cut(s) 345, 369, 417, 465, 534
BisI GCNGC 4 cut(s) 365, 486, 530, 579
BlsI GCNGC 4 cut(s) 366, 487, 531, 580
Bme1390I CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
BmrFI CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
BpuMI CCSGG 5 cut(s) 345, 369, 417, 465, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 89, 99
BseBI CCWGG 2 cut(s) 393, 441
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 353, 518
BseNI ACTGG 2 cut(s) 89, 99
BseYI CCCAGC 1 cut(s) 556
Bsh1236I CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BshFI GGCC 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 476, 569
BsiSI CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 476, 569
Bsp1407I TGTACA 1 cut(s) 126
BspACI CCGC 5 cut(s) 241, 365, 486, 530, 579
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 2 cut(s) 352, 517
BspFNI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BsrFI RCCGGY 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 2 cut(s) 89, 99
BssAI RCCGGY 1 cut(s) 243
BssSI CACGAG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 2 cut(s) 393, 441
Bst4CI ACNGT 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 8 cut(s) 279, 304, 353, 357, 518, 522, 596, 619
BstDEI CTNAG 2 cut(s) 339, 504
BstFNI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BstHHI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
BstMWI GCNNNNNNNGC 4 cut(s) 249, 312, 361, 526
BstNI CCWGG 2 cut(s) 393, 441
BstSCI CCNGG 7 cut(s) 343, 367, 391, 415, 439, 463, 532
BstUI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BsuRI GGCC 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 55, 551
Cac8I GCNNGC 8 cut(s) 279, 304, 353, 357, 518, 522, 596, 619
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
Cfr10I RCCGGY 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 89, 133
CviJI RGCY 7 cut(s) 8, 196, 232, 343, 375, 516, 594
CviKI_1 RGCY 7 cut(s) 8, 196, 232, 343, 375, 516, 594
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 339, 504
EcoRII CCWGG 2 cut(s) 391, 439
FaeI CATG 2 cut(s) 92, 136
FaiI YATR 6 cut(s) 69, 90, 134, 183, 225, 258
FatI CATG 2 cut(s) 88, 132
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 365, 486, 530, 579
Fsp4HI GCNGC 4 cut(s) 365, 486, 530, 579
GlaI GCGC 6 cut(s) 253, 328, 424, 541, 616, 622
GluI GCNGC 4 cut(s) 365, 486, 530, 579
GsaI CCCAGC 1 cut(s) 560
HaeIII GGCC 1 cut(s) 516
HapII CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
HhaI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
Hin1II CATG 2 cut(s) 92, 136
Hin6I GCGC 6 cut(s) 252, 327, 423, 540, 615, 621
HinP1I GCGC 6 cut(s) 252, 327, 423, 540, 615, 621
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 4 cut(s) 35, 119, 492, 585
HpaII CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 82, 129, 551
Hpy188I TCNGA 2 cut(s) 34, 145
Hpy188III TCNNGA 1 cut(s) 589
Hpy8I GTNNAC 3 cut(s) 82, 129, 551
Hpy99I CGWCG 4 cut(s) 271, 391, 415, 463
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 312, 361, 526
HpyF3I CTNAG 2 cut(s) 339, 504
Hsp92II CATG 2 cut(s) 92, 136
HspAI GCGC 6 cut(s) 252, 327, 423, 540, 615, 621
LmnI GCTCC 1 cut(s) 146
MabI ACCWGGT 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 586
MboII GAAGA 1 cut(s) 3
MhlI GDGCHC 2 cut(s) 476, 569
MluCI AATT 2 cut(s) 213, 220
MlyI GAGTC 2 cut(s) 501, 594
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 1 cut(s) 614
MseI TTAA 2 cut(s) 20, 631
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
MspR9I CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
MvaI CCWGG 2 cut(s) 393, 441
MvnI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
MwoI GCNNNNNNNGC 4 cut(s) 249, 312, 361, 526
NciI CCSGG 5 cut(s) 345, 369, 417, 465, 534
NlaIII CATG 2 cut(s) 92, 136
NmuCI GTSAC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 35, 119
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 4 cut(s) 366, 487, 531, 580
PleI GAGTC 2 cut(s) 500, 593
PpsI GAGTC 2 cut(s) 500, 593
Psp6I CCWGG 2 cut(s) 391, 439
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 2 cut(s) 391, 439
PstNI CAGNNNCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 20, 631
SatI GCNGC 4 cut(s) 365, 486, 530, 579
SchI GAGTC 2 cut(s) 501, 594
ScrFI CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
SduI GDGCHC 2 cut(s) 476, 569
SetI ASST 7 cut(s) 10, 19, 198, 234, 442, 596, 606
SexAI ACCWGGT 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 2 cut(s) 213, 220
SsiI CCGC 5 cut(s) 241, 365, 486, 530, 579
SspI AATATT 1 cut(s) 190
StyD4I CCNGG 7 cut(s) 343, 367, 391, 415, 439, 463, 532
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 213, 220
TatI WGTACW 1 cut(s) 126
TauI GCSGC 4 cut(s) 367, 488, 532, 581
TfiI GAWTC 2 cut(s) 35, 119
Tru1I TTAA 2 cut(s) 20, 631
Tru9I TTAA 2 cut(s) 20, 631
TscAI CASTG 2 cut(s) 55, 558
TseFI GTSAC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 3 cut(s) 105, 149, 162
TspRI CASTG 2 cut(s) 55, 558
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.