Rh6BG033400

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
4982360 .. 5065104
82745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG033400.1

Sequence Viewer

Length: 279 bp
ATGGAAGCTTCTTCAGGTTTAACGACAACTTCGGAATCTATCAACCACAGTGATGATGGCGAAAAGTATGCTAATGGTGTCAACTGGGATGAACTGGCATTTGGAATAACTCCAACTGATTCGATGTACACCATGAACTGCTCCGATGGAAACAACTTTTCGCAAGGACATCTCATTCCGTATGGAAATATTGAGCTTTGTCCATCTGCTGGAATTTTGAATTATGGACAGGTAGGTCAGCAAACATTCAACTTGATATATATATATATAGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.03

Weight (kDa)

4.05

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031251)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003226.1_g000007
rosa_samantha Rh6BG033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 234
AccB7I CCANNNNNTGG 1 cut(s) 209
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 2 cut(s) 220, 250
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 2 cut(s) 8, 196
AluI AGCT 2 cut(s) 8, 196
ApoI RAATTY 1 cut(s) 213
BccI CCATC 3 cut(s) 50, 140, 211
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BmrI ACTGGG 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 89, 99
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 89, 99
BslI CCNNNNNNNGG 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 2 cut(s) 89, 99
Bst4CI ACNGT 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 126
BstF5I GGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 55
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 133
CviJI RGCY 2 cut(s) 8, 196
CviKI_1 RGCY 2 cut(s) 8, 196
CviQI GTAC 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 234
DseDI GACNNNNNNGTC 1 cut(s) 234
FaeI CATG 1 cut(s) 136
FatI CATG 1 cut(s) 132
FokI GGATG 1 cut(s) 101
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 35, 119
Hpy166II GTNNAC 2 cut(s) 82, 129
Hpy188I TCNGA 2 cut(s) 34, 145
Hpy8I GTNNAC 2 cut(s) 82, 129
HpyCH4III ACNGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 136
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 70, 80, 195, 215
MboII GAAGA 1 cut(s) 3
MluCI AATT 2 cut(s) 213, 220
MmeI TCCRAC 1 cut(s) 137
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 51
NlaIII CATG 1 cut(s) 136
PfeI GAWTC 2 cut(s) 35, 119
PflMI CCANNNNNTGG 1 cut(s) 209
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 20
SetI ASST 5 cut(s) 10, 19, 198, 234, 238
SgeI CNNG 8 cut(s) 27, 97, 107, 145, 176, 222, 242, 265
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 2 cut(s) 213, 220
SspI AATATT 1 cut(s) 190
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 213, 220
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 2 cut(s) 35, 119
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 105, 149
TspGWI ACGGA 1 cut(s) 168
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.