Rmu_sc0003226.1_g000007

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0031251
Physical Location & Seq
Reverse (-)
23983 .. 26258
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
atggaagcttcttcaggtttaacgacaacttctgaatctatcaaccacagtgatgatggcgaaaagtatgctaatggtgtcaactggcatgaactggcatttggaataactccaactgattcgatgtacaccatgaactgctccgatgaaaataacttctcacaaggacatctcattccctatggaaatattgagctttgtccatctgctggaattttgaattatggacagctactgacccgccggtatcgcgcccatacttcgccgtcggggtcgcacgcttggttctccatcggggtcgcacgcttggttcgccgtcagggtcgcgcccttgcttctcagccgggtcgcctgcttgcttcgccgccgggtagcccccttgcttcgtcgcctggtcgcccccttgcttcgtcgccgggtcgcgcccctgctttgccacctggttgcacacttggttcgtcgccgggattgtgctcttgcttcgccgccggagtccttgcttctcagcagggtggcctgcttgcttcgccgccgggtcgcgcacttggttcactgctgggattgtgctcttgcttcgccgccggagtcacgagcttgcttcacctctggggtcgcgctcgcgcccttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

210

Amino Acids

21.66

Weight (kDa)

8.79

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031251)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003226.1_g000007
rosa_samantha Rh6BG033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AccII CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
AciI CCGC 5 cut(s) 241, 365, 486, 530, 579
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 391, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 4 cut(s) 8, 196, 232, 594
AluI AGCT 4 cut(s) 8, 196, 232, 594
Alw21I GWGCWC 2 cut(s) 476, 569
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 213
AspLEI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
AsuC2I CCSGG 5 cut(s) 345, 369, 417, 465, 534
AsuHPI GGTGA 1 cut(s) 593
BauI CACGAG 1 cut(s) 589
Bbv12I GWGCWC 2 cut(s) 476, 569
BccI CCATC 3 cut(s) 50, 211, 299
BceAI ACGGC 2 cut(s) 250, 300
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BciT130I CCWGG 2 cut(s) 393, 441
BcnI CCSGG 5 cut(s) 345, 369, 417, 465, 534
BisI GCNGC 4 cut(s) 365, 486, 530, 579
BlsI GCNGC 4 cut(s) 366, 487, 531, 580
Bme1390I CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
BmrFI CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
BpuMI CCSGG 5 cut(s) 345, 369, 417, 465, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 89, 99
BseBI CCWGG 2 cut(s) 393, 441
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 353, 518
BseNI ACTGG 2 cut(s) 89, 99
BseYI CCCAGC 1 cut(s) 556
Bsh1236I CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BshFI GGCC 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 476, 569
BsiSI CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 1 cut(s) 516
Bsp1286I GDGCHC 2 cut(s) 476, 569
Bsp1407I TGTACA 1 cut(s) 126
BspACI CCGC 5 cut(s) 241, 365, 486, 530, 579
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 2 cut(s) 352, 517
BspFNI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BsrFI RCCGGY 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 126
BsrI ACTGG 2 cut(s) 89, 99
BssAI RCCGGY 1 cut(s) 243
BssSI CACGAG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 2 cut(s) 393, 441
Bst4CI ACNGT 1 cut(s) 50
BstAUI TGTACA 1 cut(s) 126
BstC8I GCNNGC 8 cut(s) 279, 304, 353, 357, 518, 522, 596, 619
BstDEI CTNAG 2 cut(s) 339, 504
BstFNI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BstHHI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
BstMWI GCNNNNNNNGC 4 cut(s) 249, 312, 361, 526
BstNI CCWGG 2 cut(s) 393, 441
BstSCI CCNGG 7 cut(s) 343, 367, 391, 415, 439, 463, 532
BstUI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
BsuRI GGCC 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 55, 551
Cac8I GCNNGC 8 cut(s) 279, 304, 353, 357, 518, 522, 596, 619
CaiI CAGNNNCTG 1 cut(s) 235
CfoI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
Cfr10I RCCGGY 1 cut(s) 243
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 89, 133
CviJI RGCY 7 cut(s) 8, 196, 232, 343, 375, 516, 594
CviKI_1 RGCY 7 cut(s) 8, 196, 232, 343, 375, 516, 594
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 339, 504
EcoRII CCWGG 2 cut(s) 391, 439
FaeI CATG 2 cut(s) 92, 136
FaiI YATR 6 cut(s) 69, 90, 134, 183, 225, 258
FatI CATG 2 cut(s) 88, 132
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 365, 486, 530, 579
Fsp4HI GCNGC 4 cut(s) 365, 486, 530, 579
GlaI GCGC 6 cut(s) 253, 328, 424, 541, 616, 622
GluI GCNGC 4 cut(s) 365, 486, 530, 579
GsaI CCCAGC 1 cut(s) 560
HaeIII GGCC 1 cut(s) 516
HapII CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
HhaI GCGC 6 cut(s) 254, 329, 425, 542, 617, 623
Hin1II CATG 2 cut(s) 92, 136
Hin6I GCGC 6 cut(s) 252, 327, 423, 540, 615, 621
HinP1I GCGC 6 cut(s) 252, 327, 423, 540, 615, 621
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 4 cut(s) 35, 119, 492, 585
HpaII CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 3 cut(s) 82, 129, 551
Hpy188I TCNGA 2 cut(s) 34, 145
Hpy188III TCNNGA 1 cut(s) 589
Hpy8I GTNNAC 3 cut(s) 82, 129, 551
Hpy99I CGWCG 4 cut(s) 271, 391, 415, 463
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 312, 361, 526
HpyF3I CTNAG 2 cut(s) 339, 504
Hsp92II CATG 2 cut(s) 92, 136
HspAI GCGC 6 cut(s) 252, 327, 423, 540, 615, 621
LmnI GCTCC 1 cut(s) 146
MabI ACCWGGT 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 586
MboII GAAGA 1 cut(s) 3
MhlI GDGCHC 2 cut(s) 476, 569
MluCI AATT 2 cut(s) 213, 220
MlyI GAGTC 2 cut(s) 501, 594
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 1 cut(s) 614
MseI TTAA 2 cut(s) 20, 631
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 8 cut(s) 244, 344, 368, 416, 464, 489, 533, 582
MspR9I CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
MvaI CCWGG 2 cut(s) 393, 441
MvnI CGCG 6 cut(s) 252, 327, 423, 540, 615, 621
MwoI GCNNNNNNNGC 4 cut(s) 249, 312, 361, 526
NciI CCSGG 5 cut(s) 345, 369, 417, 465, 534
NlaIII CATG 2 cut(s) 92, 136
NmuCI GTSAC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 35, 119
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 4 cut(s) 366, 487, 531, 580
PleI GAGTC 2 cut(s) 500, 593
PpsI GAGTC 2 cut(s) 500, 593
Psp6I CCWGG 2 cut(s) 391, 439
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 2 cut(s) 391, 439
PstNI CAGNNNCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 20, 631
SatI GCNGC 4 cut(s) 365, 486, 530, 579
SchI GAGTC 2 cut(s) 501, 594
ScrFI CCNGG 7 cut(s) 345, 369, 393, 417, 441, 465, 534
SduI GDGCHC 2 cut(s) 476, 569
SetI ASST 7 cut(s) 10, 19, 198, 234, 442, 596, 606
SexAI ACCWGGT 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 2 cut(s) 213, 220
SsiI CCGC 5 cut(s) 241, 365, 486, 530, 579
SspI AATATT 1 cut(s) 190
StyD4I CCNGG 7 cut(s) 343, 367, 391, 415, 439, 463, 532
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 213, 220
TatI WGTACW 1 cut(s) 126
TauI GCSGC 4 cut(s) 367, 488, 532, 581
TfiI GAWTC 2 cut(s) 35, 119
Tru1I TTAA 2 cut(s) 20, 631
Tru9I TTAA 2 cut(s) 20, 631
TscAI CASTG 2 cut(s) 55, 558
TseFI GTSAC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 3 cut(s) 105, 149, 162
TspRI CASTG 2 cut(s) 55, 558
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.