Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0031252

Physical Location & Seq

Genomic Coordinates Forward (+)

111975 .. 113618

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

atggccgagaagaagggcatgcttccatttcaattttcaaggctgctgcgacgctacaatattccttccggaggacggcctgagatgggtcaacctgaacccagtaacacaagtgggaccgacaagatgagttcggatccaaacttgcgcaagcctccccgtaaaacaggtgtgatggaactcatggatgctcctccacacgacagtgtgactgatactgcagatacatctcaagatgagggggaaggatctaatccagttaaagaagaatcaaataagcgcagcgacaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcatatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagaagtgtgatggaactcatggatgctcctccagacgacagtgtgactgatactgcagatacatctcaagatgagggggaaggatctaaaccagttaaagaagaatcaaataagcgcagcggcaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcatatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagaagtgtgatggaactcatggatactcctgaagaccagagtgtgactggtactgcagatacatctcaagatgtggagggagaacaatacaacgcagttcgagaagaaacatatgactacgaaaataaacggctcctacccaagattaaaaaaccttcaaggagtggtgcaaagaagagaaaagaaaagcattctggaatccgtcgagttctgaataatgtattttggtctgatttacaggaggcagaacaacctcaagatggtgacaacgatgagggggaaggatgtaatccagttaaagaagaatcaaataagcgcagcgacaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcatatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagaagtgtgatggaactcatggatgctcctccagacgacagtgtgactgatactgcagatacatctcaagatgagggggaaggatctaaaccagttaaagaagaatcaaataagcgcagcggcaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcaaatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagtagtgtgatggaactcatggatactcctgaagaccagagtgtgactgataccgcagatacatctcaagatgtggagggagaagaagtgaggctggcgttatcggattttaatcgggcggagaaggcgttaacctcttctcgtggtcgatggaagtacgatgtgtttctaagtttcagagggccagatacgcgcaaggggattacctccgagctgtatgatagactagaacggagaggaattaaaacctttatggatgaccccaatcttgatgtaggagattccattagcccgtctcttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

547

Amino Acids

60.43

Weight (kDa)

4.85

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031252)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003226.1_g000024 Rmu_sc0003226.1_g000079

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	149
AccII	CGCG	5 cut(s)	382, 625, 1069, 1312, 1531
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	8 cut(s)	382, 528, 625, 1069, 1215, 1312, 1392, 1457
AclWI	GGATC	5 cut(s)	131, 144, 256, 499, 1186
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	702, 1389
AfaI	GTAC	2 cut(s)	703, 1496
AgsI	TTSAA	4 cut(s)	32, 39, 810, 1290
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	5 cut(s)	347, 590, 1034, 1277, 1552
AluI	AGCT	5 cut(s)	347, 590, 1034, 1277, 1552
Alw26I	GTCTC	5 cut(s)	305, 548, 992, 1235, 1638
AlwI	GGATC	5 cut(s)	131, 144, 256, 499, 1186
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	7 cut(s)	3, 77, 383, 626, 1070, 1313, 1520
AspLEI	GCGC	6 cut(s)	150, 282, 525, 969, 1212, 1533
AspS9I	GGNCC	6 cut(s)	117, 384, 627, 1071, 1314, 1520
AsuHPI	GGTGA	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	1479
BbsI	GAAGAC	2 cut(s)	690, 1377
BccI	CCATC	8 cut(s)	79, 169, 412, 655, 905, 1099, 1342, 1482
BceAI	ACGGC	2 cut(s)	92, 797
BciVI	GTATCC	2 cut(s)	667, 1354
BcoDI	GTCTC	5 cut(s)	305, 548, 992, 1235, 1638
BfaI	CTAG	1 cut(s)	1565
BfmI	CTRYAG	4 cut(s)	219, 462, 705, 1149
BfuI	GTATCC	2 cut(s)	667, 1354
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	6 cut(s)	117, 384, 627, 1071, 1314, 1520
BmiI	GGNNCC	7 cut(s)	118, 138, 386, 629, 785, 1073, 1316
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	690, 1377
BpmI	CTGGAG	2 cut(s)	423, 1110
BsaBI	GATNNNNATC	1 cut(s)	1449
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	4 cut(s)	1410, 1440, 1451, 1481
Bse1I	ACTGG	6 cut(s)	102, 257, 500, 703, 944, 1187
Bse8I	GATNNNNATC	1 cut(s)	1449
BseAI	TCCGGA	1 cut(s)	68
BseGI	GGATG	5 cut(s)	193, 436, 941, 1123, 1600
BseJI	GATNNNNATC	1 cut(s)	1449
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	6 cut(s)	102, 257, 500, 703, 944, 1187
BseRI	GAGGAG	3 cut(s)	183, 426, 1113
Bsh1236I	CGCG	5 cut(s)	382, 625, 1069, 1312, 1531
BshFI	GGCC	7 cut(s)	5, 79, 385, 628, 1072, 1315, 1522
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	130
BsmAI	GTCTC	5 cut(s)	305, 548, 992, 1235, 1638
BsmBI	CGTCTC	1 cut(s)	1638
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	7 cut(s)	5, 79, 385, 628, 1072, 1315, 1522
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	136, 248, 491, 1178
BspACI	CCGC	8 cut(s)	382, 528, 625, 1069, 1215, 1312, 1392, 1457
BspANI	GGCC	7 cut(s)	5, 79, 385, 628, 1072, 1315, 1522
BspCNI	CTCAG	1 cut(s)	73
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	5 cut(s)	382, 625, 1069, 1312, 1531
BspLI	GGNNCC	7 cut(s)	118, 138, 386, 629, 785, 1073, 1316
BspMAI	CTGCAG	4 cut(s)	223, 466, 709, 1153
BspPI	GGATC	5 cut(s)	131, 144, 256, 499, 1186
BsrI	ACTGG	6 cut(s)	102, 257, 500, 703, 944, 1187
BssMI	GATC	4 cut(s)	136, 248, 491, 1178
BssSI	CACGAG	1 cut(s)	1479
Bst2BI	CACGAG	1 cut(s)	1479
Bst4CI	ACNGT	7 cut(s)	206, 299, 449, 542, 986, 1136, 1229
Bst6I	CTCTTC	2 cut(s)	821, 1480
BstC8I	GCNNGC	3 cut(s)	20, 152, 1434
BstDEI	CTNAG	2 cut(s)	81, 1508
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	5 cut(s)	193, 436, 941, 1123, 1600
BstFNI	CGCG	5 cut(s)	382, 625, 1069, 1312, 1531
BstHHI	GCGC	6 cut(s)	150, 282, 525, 969, 1212, 1533
BstKTI	GATC	4 cut(s)	139, 251, 494, 1181
BstMAI	GTCTC	5 cut(s)	305, 548, 992, 1235, 1638
BstMBI	GATC	4 cut(s)	136, 248, 491, 1178
BstMWI	GCNNNNNNNGC	2 cut(s)	1463, 1528
BstNSI	RCATGY	1 cut(s)	22
BstSFI	CTRYAG	4 cut(s)	219, 462, 705, 1149
BstUI	CGCG	5 cut(s)	382, 625, 1069, 1312, 1531
BstV2I	GAAGAC	2 cut(s)	690, 1377
BstX2I	RGATCY	4 cut(s)	136, 248, 491, 1178
BstYI	RGATCY	4 cut(s)	136, 248, 491, 1178
BsuI	GTATCC	2 cut(s)	667, 1354
BsuRI	GGCC	7 cut(s)	5, 79, 385, 628, 1072, 1315, 1522
BtsCI	GGATG	5 cut(s)	193, 436, 941, 1123, 1600
BtsIMutI	CAGTG	3 cut(s)	211, 454, 1141
Cac8I	GCNNGC	3 cut(s)	20, 152, 1434
CfoI	GCGC	6 cut(s)	150, 282, 525, 969, 1212, 1533
Cfr13I	GGNCC	6 cut(s)	117, 384, 627, 1071, 1314, 1520
CseI	GACGC	5 cut(s)	60, 393, 636, 1080, 1323
Csp6I	GTAC	2 cut(s)	702, 1495
CviAII	CATG	6 cut(s)	19, 184, 427, 670, 1114, 1357
CviQI	GTAC	2 cut(s)	702, 1495
DdeI	CTNAG	2 cut(s)	81, 1508
DpnI	GATC	4 cut(s)	138, 250, 493, 1180
DpnII	GATC	4 cut(s)	136, 248, 491, 1178
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	821, 1480
EarI	CTCTTC	2 cut(s)	821, 1480
EciI	GGCGGA	1 cut(s)	1472
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	702, 1389
EcoNI	CCTNNNNNAGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	1638
FaeI	CATG	6 cut(s)	22, 187, 430, 673, 1117, 1360
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	6 cut(s)	18, 183, 426, 669, 1113, 1356
FauNDI	CATATG	4 cut(s)	361, 604, 763, 1048
FokI	GGATG	5 cut(s)	200, 443, 948, 1130, 1607
FspBI	CTAG	1 cut(s)	1565
FspI	TGCGCA	1 cut(s)	149
GlaI	GCGC	6 cut(s)	149, 281, 524, 968, 1211, 1532
GsuI	CTGGAG	2 cut(s)	423, 1110
HaeIII	GGCC	7 cut(s)	5, 79, 385, 628, 1072, 1315, 1522
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	5 cut(s)	60, 393, 636, 1080, 1323
HhaI	GCGC	6 cut(s)	150, 282, 525, 969, 1212, 1533
Hin1II	CATG	6 cut(s)	22, 187, 430, 673, 1117, 1360
Hin6I	GCGC	6 cut(s)	148, 280, 523, 967, 1210, 1531
HinP1I	GCGC	6 cut(s)	148, 280, 523, 967, 1210, 1531
HincII	GTYRAC	2 cut(s)	92, 1470
HindII	GTYRAC	2 cut(s)	92, 1470
HpaI	GTTAAC	1 cut(s)	1470
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	2 cut(s)	92, 1470
Hpy188I	TCNGA	6 cut(s)	136, 864, 883, 1444, 1517, 1549
Hpy8I	GTNNAC	2 cut(s)	92, 1470
Hpy99I	CGWCG	6 cut(s)	54, 409, 652, 858, 1096, 1339
HpyAV	CCTTC	8 cut(s)	7, 75, 239, 482, 816, 926, 1169, 1456
HpyCH4III	ACNGT	7 cut(s)	206, 299, 449, 542, 986, 1136, 1229
HpyCH4V	TGCA	9 cut(s)	221, 344, 464, 587, 707, 821, 1031, 1151, 1274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1463, 1528
HpyF3I	CTNAG	2 cut(s)	81, 1508
Hsp92II	CATG	6 cut(s)	22, 187, 430, 673, 1117, 1360
HspAI	GCGC	6 cut(s)	148, 280, 523, 967, 1210, 1531
Kpn2I	TCCGGA	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	1470
Kzo9I	GATC	4 cut(s)	136, 248, 491, 1178
LmnI	GCTCC	4 cut(s)	196, 439, 789, 1126
MaeI	CTAG	1 cut(s)	1565
MalI	GATC	4 cut(s)	138, 250, 493, 1180
MboI	GATC	4 cut(s)	136, 248, 491, 1178
MflI	RGATCY	4 cut(s)	136, 248, 491, 1178
MluCI	AATT	2 cut(s)	32, 1578
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	9 cut(s)	261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	528, 1215
MspI	CCGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	841
MvnI	CGCG	5 cut(s)	382, 625, 1069, 1312, 1531
MwoI	GCNNNNNNNGC	2 cut(s)	1463, 1528
NdeI	CATATG	4 cut(s)	361, 604, 763, 1048
NdeII	GATC	4 cut(s)	136, 248, 491, 1178
NlaIII	CATG	6 cut(s)	22, 187, 430, 673, 1117, 1360
NlaIV	GGNNCC	7 cut(s)	118, 138, 386, 629, 785, 1073, 1316
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	6 cut(s)	208, 451, 694, 914, 1138, 1381
NsbI	TGCGCA	1 cut(s)	149
NspI	RCATGY	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	841
PspN4I	GGNNCC	7 cut(s)	118, 138, 386, 629, 785, 1073, 1316
PspPI	GGNCC	6 cut(s)	117, 384, 627, 1071, 1314, 1520
PstI	CTGCAG	4 cut(s)	223, 466, 709, 1153
PsuI	RGATCY	4 cut(s)	136, 248, 491, 1178
RsaI	GTAC	2 cut(s)	703, 1496
RsaNI	GTAC	2 cut(s)	702, 1495
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	9 cut(s)	261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
Sau3AI	GATC	4 cut(s)	136, 248, 491, 1178
Sau96I	GGNCC	6 cut(s)	117, 384, 627, 1071, 1314, 1520
SfcI	CTRYAG	4 cut(s)	219, 462, 705, 1149
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	204
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	32, 1578
SsiI	CCGC	8 cut(s)	382, 528, 625, 1069, 1215, 1312, 1392, 1457
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	1565
TaaI	ACNGT	7 cut(s)	206, 299, 449, 542, 986, 1136, 1229
TaqI	TCGA	7 cut(s)	407, 650, 751, 856, 1094, 1337, 1486
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	32, 1578
TauI	GCSGC	6 cut(s)	385, 531, 628, 1072, 1218, 1315
Tru1I	TTAA	9 cut(s)	261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
Tru9I	TTAA	9 cut(s)	261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
TscAI	CASTG	3 cut(s)	211, 454, 1141
TseFI	GTSAC	6 cut(s)	208, 451, 694, 914, 1138, 1381
Tsp45I	GTSAC	6 cut(s)	208, 451, 694, 914, 1138, 1381
TspDTI	ATGAA	3 cut(s)	348, 591, 1035
TspGWI	ACGGA	2 cut(s)	842, 1585
TspRI	CASTG	3 cut(s)	211, 454, 1141
VpaK11BI	GGWCC	1 cut(s)	117
XagI	CCTNNNNNAGG	1 cut(s)	69
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XspI	CTAG	1 cut(s)	1565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.