Rmu_sc0003226.1_g000079

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0031252
Physical Location & Seq
Forward (+)
276164 .. 276631
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000079.1.cds

Sequence Viewer

Length: 468 bp
atgagttcggatccaaacttgcgcaaggctccccgtgaaacaagtgtgatggaactcatggatgctcctccagacgacagtgtgactgatactgcagatacatctcaagatgtggaggaaggatgtaatccatttaaagaagaatcaaatgagcgcagcgacaagcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcaaatgattccaaaagaaaattgcggccccttaaaaagatgggtacgagaaggccagatacgcgatggaagtacgatgtgtttctaagtttcagagggccagatacgcgcaaggggattacctccgagctgtatgatagactagaacggagaggaattaaaacctttatggatgacaagatttgccattatcattctttcacccaactatgcttcttcgccatggtgcttggatga

Protein Analysis

155

Amino Acids

17.79

Weight (kDa)

5.28

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031252)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003226.1_g000024 Rmu_sc0003226.1_g000079

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
AccII CGCG 2 cut(s) 295, 340
AciI CCGC 1 cut(s) 256
AclWI GGATC 2 cut(s) 5, 18
AfaI GTAC 2 cut(s) 277, 305
AgsI TTSAA 1 cut(s) 234
AluBI AGCT 2 cut(s) 221, 361
AluI AGCT 2 cut(s) 221, 361
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 2 cut(s) 5, 18
AoxI GGCC 3 cut(s) 257, 284, 329
ApeKI GCWGC 2 cut(s) 156, 218
AspLEI GCGC 3 cut(s) 24, 156, 342
AspS9I GGNCC 2 cut(s) 258, 329
AsuHPI GGTGA 1 cut(s) 424
BamHI GGATCC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BbvI GCAGC 2 cut(s) 168, 230
BccI CCATC 3 cut(s) 43, 265, 291
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 3 cut(s) 157, 219, 257
BlsI GCNGC 3 cut(s) 158, 220, 258
BmgT120I GGNCC 2 cut(s) 258, 329
BmiI GGNNCC 3 cut(s) 12, 30, 260
BmsI GCATC 3 cut(s) 52, 190, 205
BpmI CTGGAG 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 90, 192
BsaJI CCNNGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 3 cut(s) 67, 128, 409
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 168, 230
Bsh1236I CGCG 2 cut(s) 295, 340
BshFI GGCC 3 cut(s) 259, 286, 331
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 3 cut(s) 259, 286, 331
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 1 cut(s) 256
BspANI GGCC 3 cut(s) 259, 286, 331
BspFNI CGCG 2 cut(s) 295, 340
BspLI GGNNCC 3 cut(s) 12, 30, 260
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 2 cut(s) 5, 18
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 80, 173
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 67, 128, 409
BstFNI CGCG 2 cut(s) 295, 340
BstHHI GCGC 3 cut(s) 24, 156, 342
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 292, 337
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 2 cut(s) 295, 340
BstV1I GCAGC 2 cut(s) 168, 230
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 3 cut(s) 259, 286, 331
BtgI CCRYGG 1 cut(s) 453
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 67, 128, 409
BtsIMutI CAGTG 1 cut(s) 85
CfoI GCGC 3 cut(s) 24, 156, 342
Cfr13I GGNCC 2 cut(s) 258, 329
Csp6I GTAC 2 cut(s) 276, 304
CviAII CATG 2 cut(s) 58, 454
CviJI RGCY 7 cut(s) 29, 166, 221, 259, 286, 331, 361
CviKI_1 RGCY 7 cut(s) 29, 166, 221, 259, 286, 331, 361
CviQI GTAC 2 cut(s) 276, 304
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraI TTTAAA 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 453
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 61, 457
FaiI YATR 5 cut(s) 59, 366, 401, 442, 455
FatI CATG 2 cut(s) 57, 453
Fnu4HI GCNGC 3 cut(s) 157, 219, 257
FokI GGATG 3 cut(s) 74, 135, 416
Fsp4HI GCNGC 3 cut(s) 157, 219, 257
FspBI CTAG 1 cut(s) 374
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 3 cut(s) 23, 155, 341
GluI GCNGC 3 cut(s) 157, 219, 257
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 3 cut(s) 259, 286, 331
HhaI GCGC 3 cut(s) 24, 156, 342
Hin1II CATG 2 cut(s) 61, 457
Hin6I GCGC 3 cut(s) 22, 154, 340
HinP1I GCGC 3 cut(s) 22, 154, 340
HinfI GANTC 3 cut(s) 143, 230, 239
HphI GGTGA 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 10, 326, 358
Hpy188III TCNNGA 3 cut(s) 71, 107, 209
HpyAV CCTTC 2 cut(s) 113, 276
HpyCH4III ACNGT 2 cut(s) 80, 173
HpyCH4V TGCA 2 cut(s) 95, 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 337
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 2 cut(s) 61, 457
HspAI GCGC 3 cut(s) 22, 154, 340
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 34, 70
LpnPI CCDG 3 cut(s) 84, 300, 345
Lsp1109I GCAGC 2 cut(s) 168, 230
LweI GCATC 3 cut(s) 52, 190, 205
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 82, 173
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 152, 439
MflI RGATCY 1 cut(s) 10
MluCI AATT 2 cut(s) 251, 387
MnlI CCTC 7 cut(s) 78, 109, 177, 220, 320, 364, 377
MseI TTAA 3 cut(s) 135, 264, 390
MvnI CGCG 2 cut(s) 295, 340
MwoI GCNNNNNNNGC 2 cut(s) 292, 337
NcoI CCATGG 1 cut(s) 453
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 61, 457
NlaIV GGNNCC 3 cut(s) 12, 30, 260
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 23
PfeI GAWTC 3 cut(s) 143, 230, 239
PkrI GCNGC 3 cut(s) 158, 220, 258
PspN4I GGNNCC 3 cut(s) 12, 30, 260
PspPI GGNCC 2 cut(s) 258, 329
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 277, 305
RsaNI GTAC 2 cut(s) 276, 304
SaqAI TTAA 3 cut(s) 135, 264, 390
SatI GCNGC 3 cut(s) 157, 219, 257
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 258, 329
SetI ASST 4 cut(s) 223, 356, 363, 398
SfaNI GCATC 3 cut(s) 52, 190, 205
SfcI CTRYAG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 105, 207
SmoI CTYRAG 2 cut(s) 105, 207
Sse9I AATT 2 cut(s) 251, 387
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 80, 173
TasI AATT 2 cut(s) 251, 387
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 3 cut(s) 143, 230, 239
Tru1I TTAA 3 cut(s) 135, 264, 390
Tru9I TTAA 3 cut(s) 135, 264, 390
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 156, 218
Tsp45I GTSAC 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.