Rmu_sc0003226.1_g000024

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0031252
Physical Location & Seq
Forward (+)
111975 .. 113618
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1644 bp
atggccgagaagaagggcatgcttccatttcaattttcaaggctgctgcgacgctacaatattccttccggaggacggcctgagatgggtcaacctgaacccagtaacacaagtgggaccgacaagatgagttcggatccaaacttgcgcaagcctccccgtaaaacaggtgtgatggaactcatggatgctcctccacacgacagtgtgactgatactgcagatacatctcaagatgagggggaaggatctaatccagttaaagaagaatcaaataagcgcagcgacaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcatatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagaagtgtgatggaactcatggatgctcctccagacgacagtgtgactgatactgcagatacatctcaagatgagggggaaggatctaaaccagttaaagaagaatcaaataagcgcagcggcaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcatatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagaagtgtgatggaactcatggatactcctgaagaccagagtgtgactggtactgcagatacatctcaagatgtggagggagaacaatacaacgcagttcgagaagaaacatatgactacgaaaataaacggctcctacccaagattaaaaaaccttcaaggagtggtgcaaagaagagaaaagaaaagcattctggaatccgtcgagttctgaataatgtattttggtctgatttacaggaggcagaacaacctcaagatggtgacaacgatgagggggaaggatgtaatccagttaaagaagaatcaaataagcgcagcgacaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcatatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagaagtgtgatggaactcatggatgctcctccagacgacagtgtgactgatactgcagatacatctcaagatgagggggaaggatctaaaccagttaaagaagaatcaaataagcgcagcggcaatcctcacagtaacccaagtgagactaacaatacagatgctactcaagatgatgcagctaaagaggattcaaatgattccaaaagaaaatcgcggccccctattaggggcaaagcgtcgagtagtgtgatggaactcatggatactcctgaagaccagagtgtgactgataccgcagatacatctcaagatgtggagggagaagaagtgaggctggcgttatcggattttaatcgggcggagaaggcgttaacctcttctcgtggtcgatggaagtacgatgtgtttctaagtttcagagggccagatacgcgcaaggggattacctccgagctgtatgatagactagaacggagaggaattaaaacctttatggatgaccccaatcttgatgtaggagattccattagcccgtctcttgtttaa

Protein Analysis

547

Amino Acids

60.43

Weight (kDa)

4.85

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 498 - 546 2.7e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031252)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003226.1_g000024 Rmu_sc0003226.1_g000079

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 149
AccII CGCG 5 cut(s) 382, 625, 1069, 1312, 1531
AccIII TCCGGA 1 cut(s) 68
AciI CCGC 8 cut(s) 382, 528, 625, 1069, 1215, 1312, 1392, 1457
AclWI GGATC 5 cut(s) 131, 144, 256, 499, 1186
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 702, 1389
AfaI GTAC 2 cut(s) 703, 1496
AgsI TTSAA 4 cut(s) 32, 39, 810, 1290
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 5 cut(s) 347, 590, 1034, 1277, 1552
AluI AGCT 5 cut(s) 347, 590, 1034, 1277, 1552
Alw26I GTCTC 5 cut(s) 305, 548, 992, 1235, 1638
AlwI GGATC 5 cut(s) 131, 144, 256, 499, 1186
Aor13HI TCCGGA 1 cut(s) 68
AoxI GGCC 7 cut(s) 3, 77, 383, 626, 1070, 1313, 1520
AspLEI GCGC 6 cut(s) 150, 282, 525, 969, 1212, 1533
AspS9I GGNCC 6 cut(s) 117, 384, 627, 1071, 1314, 1520
AsuHPI GGTGA 1 cut(s) 926
AvaII GGWCC 1 cut(s) 117
BamHI GGATCC 1 cut(s) 136
BauI CACGAG 1 cut(s) 1479
BbsI GAAGAC 2 cut(s) 690, 1377
BccI CCATC 8 cut(s) 79, 169, 412, 655, 905, 1099, 1342, 1482
BceAI ACGGC 2 cut(s) 92, 797
BciVI GTATCC 2 cut(s) 667, 1354
BcoDI GTCTC 5 cut(s) 305, 548, 992, 1235, 1638
BfaI CTAG 1 cut(s) 1565
BfmI CTRYAG 4 cut(s) 219, 462, 705, 1149
BfuI GTATCC 2 cut(s) 667, 1354
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 6 cut(s) 117, 384, 627, 1071, 1314, 1520
BmiI GGNNCC 7 cut(s) 118, 138, 386, 629, 785, 1073, 1316
BmrI ACTGGG 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 690, 1377
BpmI CTGGAG 2 cut(s) 423, 1110
BsaBI GATNNNNATC 1 cut(s) 1449
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 4 cut(s) 1410, 1440, 1451, 1481
Bse1I ACTGG 6 cut(s) 102, 257, 500, 703, 944, 1187
Bse8I GATNNNNATC 1 cut(s) 1449
BseAI TCCGGA 1 cut(s) 68
BseGI GGATG 5 cut(s) 193, 436, 941, 1123, 1600
BseJI GATNNNNATC 1 cut(s) 1449
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 6 cut(s) 102, 257, 500, 703, 944, 1187
BseRI GAGGAG 3 cut(s) 183, 426, 1113
Bsh1236I CGCG 5 cut(s) 382, 625, 1069, 1312, 1531
BshFI GGCC 7 cut(s) 5, 79, 385, 628, 1072, 1315, 1522
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 130
BsmAI GTCTC 5 cut(s) 305, 548, 992, 1235, 1638
BsmBI CGTCTC 1 cut(s) 1638
BsmFI GGGAC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 7 cut(s) 5, 79, 385, 628, 1072, 1315, 1522
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 4 cut(s) 136, 248, 491, 1178
BspACI CCGC 8 cut(s) 382, 528, 625, 1069, 1215, 1312, 1392, 1457
BspANI GGCC 7 cut(s) 5, 79, 385, 628, 1072, 1315, 1522
BspCNI CTCAG 1 cut(s) 73
BspEI TCCGGA 1 cut(s) 68
BspFNI CGCG 5 cut(s) 382, 625, 1069, 1312, 1531
BspLI GGNNCC 7 cut(s) 118, 138, 386, 629, 785, 1073, 1316
BspMAI CTGCAG 4 cut(s) 223, 466, 709, 1153
BspPI GGATC 5 cut(s) 131, 144, 256, 499, 1186
BsrI ACTGG 6 cut(s) 102, 257, 500, 703, 944, 1187
BssMI GATC 4 cut(s) 136, 248, 491, 1178
BssSI CACGAG 1 cut(s) 1479
Bst2BI CACGAG 1 cut(s) 1479
Bst4CI ACNGT 7 cut(s) 206, 299, 449, 542, 986, 1136, 1229
Bst6I CTCTTC 2 cut(s) 821, 1480
BstC8I GCNNGC 3 cut(s) 20, 152, 1434
BstDEI CTNAG 2 cut(s) 81, 1508
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 5 cut(s) 193, 436, 941, 1123, 1600
BstFNI CGCG 5 cut(s) 382, 625, 1069, 1312, 1531
BstHHI GCGC 6 cut(s) 150, 282, 525, 969, 1212, 1533
BstKTI GATC 4 cut(s) 139, 251, 494, 1181
BstMAI GTCTC 5 cut(s) 305, 548, 992, 1235, 1638
BstMBI GATC 4 cut(s) 136, 248, 491, 1178
BstMWI GCNNNNNNNGC 2 cut(s) 1463, 1528
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 4 cut(s) 219, 462, 705, 1149
BstUI CGCG 5 cut(s) 382, 625, 1069, 1312, 1531
BstV2I GAAGAC 2 cut(s) 690, 1377
BstX2I RGATCY 4 cut(s) 136, 248, 491, 1178
BstYI RGATCY 4 cut(s) 136, 248, 491, 1178
BsuI GTATCC 2 cut(s) 667, 1354
BsuRI GGCC 7 cut(s) 5, 79, 385, 628, 1072, 1315, 1522
BtsCI GGATG 5 cut(s) 193, 436, 941, 1123, 1600
BtsIMutI CAGTG 3 cut(s) 211, 454, 1141
Cac8I GCNNGC 3 cut(s) 20, 152, 1434
CfoI GCGC 6 cut(s) 150, 282, 525, 969, 1212, 1533
Cfr13I GGNCC 6 cut(s) 117, 384, 627, 1071, 1314, 1520
CseI GACGC 5 cut(s) 60, 393, 636, 1080, 1323
Csp6I GTAC 2 cut(s) 702, 1495
CviAII CATG 6 cut(s) 19, 184, 427, 670, 1114, 1357
CviQI GTAC 2 cut(s) 702, 1495
DdeI CTNAG 2 cut(s) 81, 1508
DpnI GATC 4 cut(s) 138, 250, 493, 1180
DpnII GATC 4 cut(s) 136, 248, 491, 1178
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 821, 1480
EarI CTCTTC 2 cut(s) 821, 1480
EciI GGCGGA 1 cut(s) 1472
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 702, 1389
EcoNI CCTNNNNNAGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 1638
FaeI CATG 6 cut(s) 22, 187, 430, 673, 1117, 1360
FaqI GGGAC 1 cut(s) 130
FatI CATG 6 cut(s) 18, 183, 426, 669, 1113, 1356
FauNDI CATATG 4 cut(s) 361, 604, 763, 1048
FokI GGATG 5 cut(s) 200, 443, 948, 1130, 1607
FspBI CTAG 1 cut(s) 1565
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 6 cut(s) 149, 281, 524, 968, 1211, 1532
GsuI CTGGAG 2 cut(s) 423, 1110
HaeIII GGCC 7 cut(s) 5, 79, 385, 628, 1072, 1315, 1522
HapII CCGG 1 cut(s) 69
HgaI GACGC 5 cut(s) 60, 393, 636, 1080, 1323
HhaI GCGC 6 cut(s) 150, 282, 525, 969, 1212, 1533
Hin1II CATG 6 cut(s) 22, 187, 430, 673, 1117, 1360
Hin6I GCGC 6 cut(s) 148, 280, 523, 967, 1210, 1531
HinP1I GCGC 6 cut(s) 148, 280, 523, 967, 1210, 1531
HincII GTYRAC 2 cut(s) 92, 1470
HindII GTYRAC 2 cut(s) 92, 1470
HpaI GTTAAC 1 cut(s) 1470
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 926
Hpy166II GTNNAC 2 cut(s) 92, 1470
Hpy188I TCNGA 6 cut(s) 136, 864, 883, 1444, 1517, 1549
Hpy8I GTNNAC 2 cut(s) 92, 1470
Hpy99I CGWCG 6 cut(s) 54, 409, 652, 858, 1096, 1339
HpyAV CCTTC 8 cut(s) 7, 75, 239, 482, 816, 926, 1169, 1456
HpyCH4III ACNGT 7 cut(s) 206, 299, 449, 542, 986, 1136, 1229
HpyCH4V TGCA 9 cut(s) 221, 344, 464, 587, 707, 821, 1031, 1151, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 1463, 1528
HpyF3I CTNAG 2 cut(s) 81, 1508
Hsp92II CATG 6 cut(s) 22, 187, 430, 673, 1117, 1360
HspAI GCGC 6 cut(s) 148, 280, 523, 967, 1210, 1531
Kpn2I TCCGGA 1 cut(s) 68
KspAI GTTAAC 1 cut(s) 1470
Kzo9I GATC 4 cut(s) 136, 248, 491, 1178
LmnI GCTCC 4 cut(s) 196, 439, 789, 1126
MaeI CTAG 1 cut(s) 1565
MalI GATC 4 cut(s) 138, 250, 493, 1180
MboI GATC 4 cut(s) 136, 248, 491, 1178
MflI RGATCY 4 cut(s) 136, 248, 491, 1178
MluCI AATT 2 cut(s) 32, 1578
MroI TCCGGA 1 cut(s) 68
MseI TTAA 9 cut(s) 261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 528, 1215
MspI CCGG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 841
MvnI CGCG 5 cut(s) 382, 625, 1069, 1312, 1531
MwoI GCNNNNNNNGC 2 cut(s) 1463, 1528
NdeI CATATG 4 cut(s) 361, 604, 763, 1048
NdeII GATC 4 cut(s) 136, 248, 491, 1178
NlaIII CATG 6 cut(s) 22, 187, 430, 673, 1117, 1360
NlaIV GGNNCC 7 cut(s) 118, 138, 386, 629, 785, 1073, 1316
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 6 cut(s) 208, 451, 694, 914, 1138, 1381
NsbI TGCGCA 1 cut(s) 149
NspI RCATGY 1 cut(s) 22
OliI CACNNNNGTG 1 cut(s) 204
PaeI GCATGC 1 cut(s) 22
PctI GAATGC 1 cut(s) 841
PspN4I GGNNCC 7 cut(s) 118, 138, 386, 629, 785, 1073, 1316
PspPI GGNCC 6 cut(s) 117, 384, 627, 1071, 1314, 1520
PstI CTGCAG 4 cut(s) 223, 466, 709, 1153
PsuI RGATCY 4 cut(s) 136, 248, 491, 1178
RsaI GTAC 2 cut(s) 703, 1496
RsaNI GTAC 2 cut(s) 702, 1495
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 9 cut(s) 261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
Sau3AI GATC 4 cut(s) 136, 248, 491, 1178
Sau96I GGNCC 6 cut(s) 117, 384, 627, 1071, 1314, 1520
SfcI CTRYAG 4 cut(s) 219, 462, 705, 1149
SinI GGWCC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 204
SphI GCATGC 1 cut(s) 22
Sse9I AATT 2 cut(s) 32, 1578
SsiI CCGC 8 cut(s) 382, 528, 625, 1069, 1215, 1312, 1392, 1457
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 1565
TaaI ACNGT 7 cut(s) 206, 299, 449, 542, 986, 1136, 1229
TaqI TCGA 7 cut(s) 407, 650, 751, 856, 1094, 1337, 1486
TaqII GACCGA 1 cut(s) 134
TasI AATT 2 cut(s) 32, 1578
TauI GCSGC 6 cut(s) 385, 531, 628, 1072, 1218, 1315
Tru1I TTAA 9 cut(s) 261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
Tru9I TTAA 9 cut(s) 261, 504, 798, 948, 1191, 1449, 1469, 1581, 1642
TscAI CASTG 3 cut(s) 211, 454, 1141
TseFI GTSAC 6 cut(s) 208, 451, 694, 914, 1138, 1381
Tsp45I GTSAC 6 cut(s) 208, 451, 694, 914, 1138, 1381
TspDTI ATGAA 3 cut(s) 348, 591, 1035
TspGWI ACGGA 2 cut(s) 842, 1585
TspRI CASTG 3 cut(s) 211, 454, 1141
VpaK11BI GGWCC 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 69
XceI RCATGY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 695
XspI CTAG 1 cut(s) 1565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.