Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003228.1

Orthogroup ID

OG0023097

Physical Location & Seq

Genomic Coordinates Reverse (-)

11717 .. 13633

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003228.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggatgatcacatgcagagcatcgttgtggcctataaagagaggctttcggagaaattgaaggaggaacttgcaggcaaacaattcaatgaagataaattatcaaatggtccagaagacaatagtaaggaggagtttgggaggtggccgacaacatggtggcagcaattcagtgtgttgttgaggagaggagtgagggagaggaagcacgagtccttctcccctctcaagatttttgaggtgcttgcagtctcttttcttactgccctactatggtggaaatcgcatatttcccacttacaagaccaggccgacggactctcaggcgacgaactctcaggcgacgggccgacggactctcacagtgactcagtgaggcggatccgctcctgcttcttcacgggccgacggactctctcaggcgacgggccgacggactctcactcctctcgccgtctgtggctcagccggctctcccgacgcccctgccactgcggcactgcccactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044464 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

169

Amino Acids

19.44

Weight (kDa)

7.82

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023097)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003228.1_g000004
rosa_rugosa	Rorug06G0046400 Rorug06G0046400 Rorug06G0046500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	387
AciI	CCGC	3 cut(s)	379, 385, 495
AclWI	GGATC	2 cut(s)	376, 389
AcoI	YGGCCR	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	61, 88
AjnI	CCWGG	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	376, 389
AoxI	GGCC	6 cut(s)	30, 146, 309, 347, 403, 428
ApeKI	GCWGC	1 cut(s)	163
AspS9I	GGNCC	4 cut(s)	110, 347, 403, 428
AvaII	GGWCC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	495
BisI	GCNGC	2 cut(s)	164, 496
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	2 cut(s)	165, 497
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	4 cut(s)	110, 347, 403, 428
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	5 cut(s)	336, 351, 384, 432, 478
BseRI	GAGGAG	4 cut(s)	146, 199, 204, 436
BseXI	GCAGC	1 cut(s)	175
BshFI	GGCC	6 cut(s)	32, 148, 311, 349, 405, 430
BsiSI	CCGG	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	6 cut(s)	32, 148, 311, 349, 405, 430
Bsp143I	GATC	2 cut(s)	7, 381
Bsp1720I	GCTNAGC	1 cut(s)	464
BspACI	CCGC	3 cut(s)	379, 385, 495
BspANI	GGCC	6 cut(s)	32, 148, 311, 349, 405, 430
BspCNI	CTCAG	5 cut(s)	335, 350, 383, 431, 477
BspLI	GGNNCC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	376, 389
BsrBI	CCGCTC	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	468
BssAI	RCCGGY	1 cut(s)	468
BssMI	GATC	2 cut(s)	7, 381
BssNI	GRCGYC	1 cut(s)	481
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	76, 246, 470
BstDEI	CTNAG	5 cut(s)	322, 337, 370, 418, 464
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	10, 384
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	7, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	469, 495
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BsuRI	GGCC	6 cut(s)	32, 148, 311, 349, 405, 430
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	490, 498
BtsIMutI	CAGTG	5 cut(s)	178, 370, 378, 490, 498
Cac8I	GCNNGC	3 cut(s)	76, 246, 470
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	4 cut(s)	110, 347, 403, 428
CseI	GACGC	1 cut(s)	489
CviAII	CATG	2 cut(s)	13, 156
DdeI	CTNAG	5 cut(s)	322, 337, 370, 418, 464
DpnI	GATC	2 cut(s)	9, 383
DpnII	GATC	2 cut(s)	7, 381
EaeI	YGGCCR	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	16, 159
FaiI	YATR	5 cut(s)	14, 36, 157, 274, 288
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	2 cut(s)	12, 155
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	164, 496
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	164, 496
FspBI	CTAG	1 cut(s)	508
GluI	GCNGC	2 cut(s)	164, 496
HaeIII	GGCC	6 cut(s)	32, 148, 311, 349, 405, 430
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	481
Hin1II	CATG	2 cut(s)	16, 159
HinfI	GANTC	6 cut(s)	212, 318, 356, 368, 412, 437
HpaII	CCGG	1 cut(s)	469
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	113, 229, 477
Hpy99I	CGWCG	8 cut(s)	317, 332, 347, 355, 411, 428, 436, 483
HpyAV	CCTTC	2 cut(s)	55, 226
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	16, 74, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	469, 495
HpyF3I	CTNAG	5 cut(s)	322, 337, 370, 418, 464
Hsp92I	GRCGYC	1 cut(s)	481
Hsp92II	CATG	2 cut(s)	16, 159
KroI	GCCGGC	1 cut(s)	468
KroNI	GCCGGC	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 381
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	508
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	9, 383
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	2 cut(s)	7, 381
MboII	GAAGA	3 cut(s)	104, 128, 388
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	4 cut(s)	56, 83, 98, 167
MlyI	GAGTC	6 cut(s)	221, 312, 350, 362, 406, 431
MroNI	GCCGGC	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	469, 495
NaeI	GCCGGC	1 cut(s)	470
NdeII	GATC	2 cut(s)	7, 381
NgoMIV	GCCGGC	1 cut(s)	468
NlaIII	CATG	2 cut(s)	16, 159
NlaIV	GGNNCC	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	165, 497
PleI	GAGTC	6 cut(s)	220, 312, 350, 362, 406, 431
PpsI	GAGTC	6 cut(s)	220, 312, 350, 362, 406, 431
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	4 cut(s)	110, 347, 403, 428
PsuI	RGATCY	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	26
SatI	GCNGC	2 cut(s)	164, 496
Sau3AI	GATC	2 cut(s)	7, 381
Sau96I	GGNCC	4 cut(s)	110, 347, 403, 428
SchI	GAGTC	6 cut(s)	221, 312, 350, 362, 406, 431
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	2 cut(s)	146, 243
SfaNI	GCATC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	56, 83, 98, 167
SsiI	CCGC	3 cut(s)	379, 385, 495
SspMI	CTAG	1 cut(s)	508
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	365
TasI	AATT	4 cut(s)	56, 83, 98, 167
TauI	GCSGC	1 cut(s)	498
TscAI	CASTG	5 cut(s)	178, 370, 378, 497, 505
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	4 cut(s)	330, 368, 424, 449
TspRI	CASTG	5 cut(s)	178, 370, 378, 497, 505
VpaK11BI	GGWCC	1 cut(s)	110
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.