Rmu_sc0003234.1_g000001

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003234.1
OG0031254
Physical Location & Seq
Reverse (-)
1 .. 825
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003234.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
atggatcctccggtggcgaaaaagaggggccggccgaggaagcggcgggctgatgatcggaaagcgggccccgaggcgaagaagcaggcattggagacgagatcgattgcgttgttggggcggtacgtgttgaaggagtttgaaagtaggatttatctggggaaggttgcgttttatgatgctggattgtatagagtgcactatgaagatggggatttcgaggacttggagagtggtgagattcggggcattcttgtgggtgagagtgattttgatgggagtttgagtgctaagaggaagaaattggataagctggtggcgaaagtgagtgacgaaaagaaggttaaggtggatgagaatgtggaaaaggaggtggtggtggatagggttgaatcctcggaattgagtgagtggagcggtagagtaactattgacaatgatgagattcgagaggatggtgatgctgatttgtctagtgattcgagtgagtgtgcagaggatatggatgccggggttgatgttgagaccccggctgtgccgccgccggagttgccaccgtcttctggaaccataggcgtgccggagcagtgtgtttcgcatcttttctctgtgtatggttttatgcggtcgtttagcatctgcctgttcttgaacccgtttactttggatgattttgtgggttcgcttaattgtcgtgctgcaaacacattgtttgatgcaattcatgttgctttgttgcgtgccttgagacgtcatcttgaaacaatctcatccgaaggctcagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009941 GO:0009987 GO:0010019 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0023052 GO:0031010 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031967 GO:0031968 GO:0031969 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035064 GO:0042170 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140030 GO:0140034 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

262

Amino Acids

29.08

Weight (kDa)

4.9

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031254)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003234.1_g000001 Rmu_sc0004818.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 417
AciI CCGC 8 cut(s) 43, 46, 65, 121, 417, 539, 542, 625
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 751
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 563
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 5 cut(s) 133, 143, 392, 652, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 3 cut(s) 89, 518, 742
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 28, 32, 67
ApaI GGGCCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 698
AspS9I GGNCC 3 cut(s) 28, 67, 68
AsuC2I CCSGG 2 cut(s) 511, 530
AsuHPI GGTGA 3 cut(s) 248, 272, 470
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 71, 201
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 685
BccI CCATC 3 cut(s) 203, 269, 449
BcnI CCSGG 2 cut(s) 511, 530
BcoDI GTCTC 3 cut(s) 89, 518, 742
BfaI CTAG 1 cut(s) 474
BisI GCNGC 4 cut(s) 44, 539, 542, 699
BlsI GCNGC 4 cut(s) 45, 540, 543, 700
Bme1390I CCNGG 2 cut(s) 511, 530
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 28, 67, 68
BmiI GGNNCC 5 cut(s) 6, 29, 69, 70, 568
BmrFI CCNGG 2 cut(s) 511, 530
BmsI GCATC 6 cut(s) 169, 451, 496, 607, 645, 706
BpiI GAAGAC 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 2 cut(s) 511, 530
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 751
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 5 cut(s) 35, 72, 396, 510, 528
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse118I RCCGGY 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 35, 72, 396, 510, 528
BseGI GGATG 5 cut(s) 358, 460, 511, 673, 770
BseLI CCNNNNNNNGG 1 cut(s) 563
BseSI GKGCMC 2 cut(s) 71, 201
BseX3I CGGCCG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 685
BsgI GTGCAG 1 cut(s) 513
Bsh1285I CGRYCG 2 cut(s) 35, 629
BshFI GGCC 3 cut(s) 30, 34, 69
BshVI ATCGAT 1 cut(s) 104
BsiEI CGRYCG 2 cut(s) 35, 629
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 6 cut(s) 11, 31, 510, 530, 545, 581
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 3 cut(s) 89, 518, 742
BsmBI CGTCTC 2 cut(s) 89, 742
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 3 cut(s) 30, 34, 69
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 71
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 71, 201
Bsp143I GATC 3 cut(s) 4, 55, 101
BspACI CCGC 8 cut(s) 43, 46, 65, 121, 417, 539, 542, 625
BspANI GGCC 3 cut(s) 30, 34, 69
BspDI ATCGAT 1 cut(s) 104
BspLI GGNNCC 5 cut(s) 6, 29, 69, 70, 568
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 5 cut(s) 35, 72, 396, 510, 528
BssMI GATC 3 cut(s) 4, 55, 101
BssNI GRCGYC 1 cut(s) 751
Bst4CI ACNGT 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 751
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 6 cut(s) 32, 48, 67, 87, 578, 741
BstDEI CTNAG 2 cut(s) 291, 781
BstF5I GGATG 5 cut(s) 358, 460, 511, 673, 770
BstKTI GATC 3 cut(s) 7, 58, 104
BstMAI GTCTC 3 cut(s) 89, 518, 742
BstMBI GATC 3 cut(s) 4, 55, 101
BstMCI CGRYCG 2 cut(s) 35, 629
BstMWI GCNNNNNNNGC 2 cut(s) 40, 550
BstSCI CCNGG 2 cut(s) 509, 528
BstSLI GKGCMC 2 cut(s) 71, 201
BstV1I GCAGC 1 cut(s) 685
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 104
BsuRI GGCC 3 cut(s) 30, 34, 69
BsuTUI ATCGAT 1 cut(s) 104
BtsCI GGATG 5 cut(s) 358, 460, 511, 673, 770
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 593
Cac8I GCNNGC 6 cut(s) 32, 48, 67, 87, 578, 741
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 3 cut(s) 28, 67, 68
ClaI ATCGAT 1 cut(s) 104
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 725
CviJI RGCY 7 cut(s) 30, 34, 50, 69, 313, 533, 780
CviKI_1 RGCY 7 cut(s) 30, 34, 50, 69, 313, 533, 780
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 291, 781
DpnI GATC 3 cut(s) 6, 57, 103
DpnII GATC 3 cut(s) 4, 55, 101
EaeI YGGCCR 1 cut(s) 32
EagI CGGCCG 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 518
Eco52I CGGCCG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 2 cut(s) 89, 742
FaeI CATG 1 cut(s) 728
FaiI YATR 8 cut(s) 177, 192, 204, 503, 572, 615, 623, 726
FatI CATG 1 cut(s) 724
FauI CCCGC 2 cut(s) 39, 58
Fnu4HI GCNGC 4 cut(s) 44, 539, 542, 699
FokI GGATG 5 cut(s) 365, 467, 518, 680, 757
FriOI GRGCYC 1 cut(s) 71
FseI GGCCGGCC 1 cut(s) 34
Fsp4HI GCNGC 4 cut(s) 44, 539, 542, 699
FspBI CTAG 1 cut(s) 474
GluI GCNGC 4 cut(s) 44, 539, 542, 699
HaeIII GGCC 3 cut(s) 30, 34, 69
HapII CCGG 6 cut(s) 11, 31, 510, 530, 545, 581
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 1 cut(s) 728
HinfI GANTC 4 cut(s) 241, 392, 445, 479
HpaII CCGG 6 cut(s) 11, 31, 510, 530, 545, 581
HphI GGTGA 3 cut(s) 248, 272, 470
Hpy166II GTNNAC 2 cut(s) 199, 660
Hpy188I TCNGA 4 cut(s) 60, 400, 775, 784
Hpy188III TCNNGA 4 cut(s) 449, 564, 649, 758
Hpy8I GTNNAC 2 cut(s) 199, 660
HpyAV CCTTC 4 cut(s) 127, 157, 334, 770
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4IV ACGT 2 cut(s) 126, 751
HpyCH4V TGCA 4 cut(s) 199, 494, 701, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 550
HpyF3I CTNAG 2 cut(s) 291, 781
HpySE526I ACGT 2 cut(s) 126, 751
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 1 cut(s) 728
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 3 cut(s) 4, 55, 101
LmnI GCTCC 2 cut(s) 414, 583
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 6 cut(s) 169, 451, 496, 607, 645, 706
MaeI CTAG 1 cut(s) 474
MaeII ACGT 2 cut(s) 126, 751
MaeIII GTNAC 2 cut(s) 329, 424
MalI GATC 3 cut(s) 6, 57, 103
MbiI CCGCTC 1 cut(s) 417
MboI GATC 3 cut(s) 4, 55, 101
MboII GAAGA 4 cut(s) 91, 218, 310, 552
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 71, 201
MluCI AATT 4 cut(s) 302, 401, 688, 720
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 2 cut(s) 345, 687
MslI CAYNNNNRTG 2 cut(s) 254, 575
MspI CCGG 6 cut(s) 11, 31, 510, 530, 545, 581
MspR9I CCNGG 2 cut(s) 511, 530
Mva1269I GAATGC 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 40, 550
NaeI GCCGGC 1 cut(s) 32
NciI CCSGG 2 cut(s) 511, 530
NdeII GATC 3 cut(s) 4, 55, 101
NgoMIV GCCGGC 1 cut(s) 30
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 5 cut(s) 6, 29, 69, 70, 568
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 329
PctI GAATGC 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 4 cut(s) 241, 392, 445, 479
PkrI GCNGC 4 cut(s) 45, 540, 543, 700
Ppu21I YACGTR 1 cut(s) 127
PspN4I GGNNCC 5 cut(s) 6, 29, 69, 70, 568
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 28, 67, 68
PsuI RGATCY 1 cut(s) 4
RigI GGCCGGCC 1 cut(s) 34
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 254, 575
SaqAI TTAA 2 cut(s) 345, 687
SatI GCNGC 4 cut(s) 44, 539, 542, 699
Sau3AI GATC 3 cut(s) 4, 55, 101
Sau96I GGNCC 3 cut(s) 28, 67, 68
ScrFI CCNGG 2 cut(s) 511, 530
SduI GDGCHC 2 cut(s) 71, 201
SetI ASST 7 cut(s) 129, 168, 315, 345, 351, 375, 754
SfaNI GCATC 6 cut(s) 169, 451, 496, 607, 645, 706
SmiMI CAYNNNNRTG 2 cut(s) 254, 575
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 4 cut(s) 302, 401, 688, 720
SsiI CCGC 8 cut(s) 43, 46, 65, 121, 417, 539, 542, 625
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 509, 528
TaaI ACNGT 1 cut(s) 558
TaiI ACGT 2 cut(s) 129, 754
TaqI TCGA 4 cut(s) 104, 219, 448, 482
TasI AATT 4 cut(s) 302, 401, 688, 720
TauI GCSGC 3 cut(s) 46, 541, 544
TfiI GAWTC 4 cut(s) 241, 392, 445, 479
Tru1I TTAA 2 cut(s) 345, 687
Tru9I TTAA 2 cut(s) 345, 687
TscAI CASTG 1 cut(s) 593
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 219, 713
TspRI CASTG 1 cut(s) 593
VneI GTGCAC 1 cut(s) 197
XspI CTAG 1 cut(s) 474
ZraI GACGTC 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.