Rmu_sc0004818.1_g000007

WSTF, HB1, Itc1p, MBD9 motif 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004818.1
OG0031254
Physical Location & Seq
Forward (+)
23358 .. 24185
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004818.1_g000007.1.cds

Sequence Viewer

Length: 828 bp
atggatcctccggtggcgaaaaagaggggccggccgaggaagcggcgggctgatgatcggaaagcgggccccgaggcgaagaagcaggcattggagacgagatcgattgcgttgttggggcggtacgtgttgaaggagtttgaaagtaggatttatctggggaaggttgcgttttatgatgctggattgtatagagtgcactatgaagatggggatttcgaggacttggagagtggtgagattcggggcattcttgtgggtgagagtgattttgatgggagtttgagtgctaagaagaagaaattggataagctggtggcgaaagtgagtgacgaaaagaaggttaaggtggatgagaatgtggaaaaggaggtggtggtggtggatagggttgaatcctcggaattgagtgagtggagcggtagagtaaccattgacaatgatgagattcgagaggatggtgatgctgatttgtctagtgattcgagtgagtgtgcagaggatatggatgccggggttgatgttgagaccccggctgtgccgccgccggagttgccaccgtcttctggaaccataggcgtgccggagcagtgtgtttcgcatcttttctcggtgtatggtttcatgcggtcgtttagtatctgcctgttcttgaacccgtttactttggatgattttgtgggttcgcttaattgtcgtgctccaaacacattgtttgatgcaattcatgttgctttgttgcgtgctttgagacgtcatcttgaaacaatctcatccgaaggctcagaggtagcacaaaaatgtttgaggtacttatacagacaactc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009941 GO:0009987 GO:0010019 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016589 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0023052 GO:0031010 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031967 GO:0031968 GO:0031969 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035064 GO:0042170 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060322 GO:0065007 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140030 GO:0140034 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1904949 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT PHD WHIM1

Protein Analysis

276

Amino Acids

30.81

Weight (kDa)

5.06

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031254)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003234.1_g000001 Rmu_sc0004818.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 757
AccBSI CCGCTC 1 cut(s) 420
AciI CCGC 8 cut(s) 43, 46, 65, 121, 420, 542, 545, 628
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 754
AfaI GTAC 2 cut(s) 125, 812
AfiI CCNNNNNNNGG 1 cut(s) 566
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 5 cut(s) 133, 143, 395, 655, 764
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 287, 319
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 2 cut(s) 201, 703
Alw26I GTCTC 3 cut(s) 89, 521, 745
Alw44I GTGCAC 1 cut(s) 197
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 3 cut(s) 28, 32, 67
ApaI GGGCCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 28, 67, 68
AsuC2I CCSGG 2 cut(s) 514, 533
AsuHPI GGTGA 3 cut(s) 248, 272, 473
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 2 cut(s) 71, 201
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 2 cut(s) 201, 703
BccI CCATC 3 cut(s) 203, 269, 452
BcnI CCSGG 2 cut(s) 514, 533
BcoDI GTCTC 3 cut(s) 89, 521, 745
BfaI CTAG 1 cut(s) 477
BisI GCNGC 3 cut(s) 44, 542, 545
BlsI GCNGC 3 cut(s) 45, 543, 546
Bme1390I CCNGG 2 cut(s) 514, 533
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 28, 67, 68
BmiI GGNNCC 5 cut(s) 6, 29, 69, 70, 571
BmrFI CCNGG 2 cut(s) 514, 533
BmsI GCATC 5 cut(s) 169, 454, 499, 610, 709
BpiI GAAGAC 1 cut(s) 555
BpuMI CCSGG 2 cut(s) 514, 533
Bsa29I ATCGAT 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 754
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 5 cut(s) 35, 72, 399, 513, 531
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse118I RCCGGY 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 35, 72, 399, 513, 531
BseGI GGATG 5 cut(s) 358, 463, 514, 676, 773
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 798
BseSI GKGCMC 2 cut(s) 71, 201
BseX3I CGGCCG 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 516
Bsh1285I CGRYCG 2 cut(s) 35, 632
BshFI GGCC 3 cut(s) 30, 34, 69
BshVI ATCGAT 1 cut(s) 104
BsiEI CGRYCG 2 cut(s) 35, 632
BsiHKAI GWGCWC 2 cut(s) 201, 703
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 6 cut(s) 11, 31, 513, 533, 548, 584
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 3 cut(s) 89, 521, 745
BsmBI CGTCTC 2 cut(s) 89, 745
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 3 cut(s) 30, 34, 69
Bso31I GGTCTC 1 cut(s) 521
BsoBI CYCGRG 1 cut(s) 71
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 3 cut(s) 71, 201, 703
Bsp143I GATC 3 cut(s) 4, 55, 101
BspACI CCGC 8 cut(s) 43, 46, 65, 121, 420, 542, 545, 628
BspANI GGCC 3 cut(s) 30, 34, 69
BspCNI CTCAG 1 cut(s) 797
BspDI ATCGAT 1 cut(s) 104
BspLI GGNNCC 5 cut(s) 6, 29, 69, 70, 571
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 521
BsrBI CCGCTC 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 5 cut(s) 35, 72, 399, 513, 531
BssMI GATC 3 cut(s) 4, 55, 101
BssNI GRCGYC 1 cut(s) 754
Bst4CI ACNGT 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 754
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 6 cut(s) 32, 48, 67, 87, 581, 744
BstDEI CTNAG 2 cut(s) 291, 784
BstF5I GGATG 5 cut(s) 358, 463, 514, 676, 773
BstKTI GATC 3 cut(s) 7, 58, 104
BstMAI GTCTC 3 cut(s) 89, 521, 745
BstMBI GATC 3 cut(s) 4, 55, 101
BstMCI CGRYCG 2 cut(s) 35, 632
BstMWI GCNNNNNNNGC 2 cut(s) 40, 553
BstSCI CCNGG 2 cut(s) 512, 531
BstSLI GKGCMC 2 cut(s) 71, 201
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 104
BsuRI GGCC 3 cut(s) 30, 34, 69
BsuTUI ATCGAT 1 cut(s) 104
BtsCI GGATG 5 cut(s) 358, 463, 514, 676, 773
BtsI GCAGTG 1 cut(s) 596
BtsIMutI CAGTG 1 cut(s) 596
Cac8I GCNNGC 6 cut(s) 32, 48, 67, 87, 581, 744
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 3 cut(s) 28, 67, 68
ClaI ATCGAT 1 cut(s) 104
Csp6I GTAC 2 cut(s) 124, 811
CviAII CATG 2 cut(s) 625, 728
CviJI RGCY 7 cut(s) 30, 34, 50, 69, 313, 536, 783
CviKI_1 RGCY 7 cut(s) 30, 34, 50, 69, 313, 536, 783
CviQI GTAC 2 cut(s) 124, 811
DdeI CTNAG 2 cut(s) 291, 784
DpnI GATC 3 cut(s) 6, 57, 103
DpnII GATC 3 cut(s) 4, 55, 101
EaeI YGGCCR 1 cut(s) 32
EagI CGGCCG 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 521
Eco52I CGGCCG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 2 cut(s) 89, 745
FaeI CATG 2 cut(s) 628, 731
FaiI YATR 9 cut(s) 177, 192, 204, 506, 575, 618, 626, 729, 817
FatI CATG 2 cut(s) 624, 727
FauI CCCGC 2 cut(s) 39, 58
Fnu4HI GCNGC 3 cut(s) 44, 542, 545
FokI GGATG 5 cut(s) 365, 470, 521, 683, 760
FriOI GRGCYC 1 cut(s) 71
FseI GGCCGGCC 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 44, 542, 545
FspBI CTAG 1 cut(s) 477
GluI GCNGC 3 cut(s) 44, 542, 545
HaeIII GGCC 3 cut(s) 30, 34, 69
HapII CCGG 6 cut(s) 11, 31, 513, 533, 548, 584
Hin1I GRCGYC 1 cut(s) 754
Hin1II CATG 2 cut(s) 628, 731
HinfI GANTC 4 cut(s) 241, 395, 448, 482
HpaII CCGG 6 cut(s) 11, 31, 513, 533, 548, 584
HphI GGTGA 3 cut(s) 248, 272, 473
Hpy166II GTNNAC 2 cut(s) 199, 663
Hpy188I TCNGA 4 cut(s) 60, 403, 778, 787
Hpy188III TCNNGA 4 cut(s) 452, 567, 652, 761
Hpy8I GTNNAC 2 cut(s) 199, 663
HpyAV CCTTC 4 cut(s) 127, 157, 334, 773
HpyCH4III ACNGT 1 cut(s) 561
HpyCH4IV ACGT 2 cut(s) 126, 754
HpyCH4V TGCA 3 cut(s) 199, 497, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 553
HpyF3I CTNAG 2 cut(s) 291, 784
HpySE526I ACGT 2 cut(s) 126, 754
Hsp92I GRCGYC 1 cut(s) 754
Hsp92II CATG 2 cut(s) 628, 731
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 3 cut(s) 4, 55, 101
LmnI GCTCC 3 cut(s) 417, 586, 706
LweI GCATC 5 cut(s) 169, 454, 499, 610, 709
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 126, 754
MaeIII GTNAC 2 cut(s) 329, 427
MalI GATC 3 cut(s) 6, 57, 103
MbiI CCGCTC 1 cut(s) 420
MboI GATC 3 cut(s) 4, 55, 101
MboII GAAGA 5 cut(s) 91, 218, 307, 310, 555
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 71, 201, 703
MluCI AATT 4 cut(s) 302, 404, 691, 723
MroNI GCCGGC 1 cut(s) 30
MseI TTAA 2 cut(s) 345, 690
MslI CAYNNNNRTG 3 cut(s) 254, 578, 799
MspI CCGG 6 cut(s) 11, 31, 513, 533, 548, 584
MspR9I CCNGG 2 cut(s) 514, 533
Mva1269I GAATGC 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 40, 553
NaeI GCCGGC 1 cut(s) 32
NciI CCSGG 2 cut(s) 514, 533
NdeII GATC 3 cut(s) 4, 55, 101
NgoMIV GCCGGC 1 cut(s) 30
NlaIII CATG 2 cut(s) 628, 731
NlaIV GGNNCC 5 cut(s) 6, 29, 69, 70, 571
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 329
PctI GAATGC 1 cut(s) 249
PdiI GCCGGC 1 cut(s) 32
PfeI GAWTC 4 cut(s) 241, 395, 448, 482
PkrI GCNGC 3 cut(s) 45, 543, 546
Ppu21I YACGTR 1 cut(s) 127
PspN4I GGNNCC 5 cut(s) 6, 29, 69, 70, 571
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 28, 67, 68
PsuI RGATCY 1 cut(s) 4
RigI GGCCGGCC 1 cut(s) 34
RsaI GTAC 2 cut(s) 125, 812
RsaNI GTAC 2 cut(s) 124, 811
RseI CAYNNNNRTG 3 cut(s) 254, 578, 799
SaqAI TTAA 2 cut(s) 345, 690
SatI GCNGC 3 cut(s) 44, 542, 545
Sau3AI GATC 3 cut(s) 4, 55, 101
Sau96I GGNCC 3 cut(s) 28, 67, 68
ScrFI CCNGG 2 cut(s) 514, 533
SduI GDGCHC 3 cut(s) 71, 201, 703
SetI ASST 9 cut(s) 129, 168, 315, 345, 351, 375, 757, 792, 812
SfaNI GCATC 5 cut(s) 169, 454, 499, 610, 709
SmiMI CAYNNNNRTG 3 cut(s) 254, 578, 799
Sse9I AATT 4 cut(s) 302, 404, 691, 723
SsiI CCGC 8 cut(s) 43, 46, 65, 121, 420, 542, 545, 628
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 512, 531
TaaI ACNGT 1 cut(s) 561
TaiI ACGT 2 cut(s) 129, 757
TaqI TCGA 4 cut(s) 104, 219, 451, 485
TasI AATT 4 cut(s) 302, 404, 691, 723
TauI GCSGC 3 cut(s) 46, 544, 547
TfiI GAWTC 4 cut(s) 241, 395, 448, 482
Tru1I TTAA 2 cut(s) 345, 690
Tru9I TTAA 2 cut(s) 345, 690
TscAI CASTG 1 cut(s) 596
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 219, 613, 716
TspRI CASTG 1 cut(s) 596
VneI GTGCAC 1 cut(s) 197
XspI CTAG 1 cut(s) 477
ZraI GACGTC 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.