Rmu_sc0003244.1_g000020

expansin-A9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003244.1
OG0025310
Physical Location & Seq
Reverse (-)
77623 .. 78084
462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
atgagttatgccattttgggttcattgcttctcatacttctcatattacctaaccatgtcagtactgctcaccataagccaaggttcagacctgcccttggaagcatgctcatgccatattctaccaaggcggctctggatcatttgatcattactataaccctatcaacttttgattttgggcgcaagtggtgcttgtggcatggttaccacgacgttgttcaagatggctatggccccgacacagtggctttgagcgacgccttgttcaacggtgggcagtcatgtggtgcatgttacaacattcgatgtgtagacactggatcgatttcctttgaaccttctttgcacatgcaaatttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

6.63

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025310)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019853
rosa_multiflora Rmu_sc0003244.1_g000020
rosa_samantha Rh2BG422300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 315
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 147, 331
AcsI RAATTY 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 3 cut(s) 224, 271, 338
AlwI GGATC 2 cut(s) 147, 331
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 357
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 62
BccI CCATC 1 cut(s) 221
BclI TGATCA 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 3 cut(s) 80, 97, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 325
Bse3DI GCAATG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 80, 97, 126
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 325
BshFI GGCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 237
Bsp143I GATC 3 cut(s) 139, 147, 323
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 237
BspDI ATCGAT 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 147, 331
BsrDI GCAATG 1 cut(s) 23
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 80, 97, 126
BssMI GATC 3 cut(s) 139, 147, 323
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 3 cut(s) 80, 97, 126
Bst4CI ACNGT 2 cut(s) 247, 275
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 206
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 142, 150, 326
BstMBI GATC 3 cut(s) 139, 147, 323
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 3 cut(s) 109, 297, 355
BstPI GGTNACC 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 326
BsuRI GGCC 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 252, 318
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 236
ClaI ATCGAT 1 cut(s) 326
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 63
CviAII CATG 7 cut(s) 56, 106, 112, 203, 285, 294, 352
CviJI RGCY 5 cut(s) 79, 134, 231, 237, 251
CviKI_1 RGCY 5 cut(s) 79, 134, 231, 237, 251
CviQI GTAC 1 cut(s) 63
DpnI GATC 3 cut(s) 141, 149, 325
DpnII GATC 3 cut(s) 139, 147, 323
Eco130I CCWWGG 3 cut(s) 80, 97, 126
Eco91I GGTNACC 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 206
EcoT14I CCWWGG 3 cut(s) 80, 97, 126
ErhI CCWWGG 3 cut(s) 80, 97, 126
FaeI CATG 7 cut(s) 59, 109, 115, 206, 288, 297, 355
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 7 cut(s) 55, 105, 111, 202, 284, 293, 351
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 7 cut(s) 59, 109, 115, 206, 288, 297, 355
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 137, 224
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 2 cut(s) 218, 263
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 2 cut(s) 247, 275
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 293, 349, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 7 cut(s) 59, 109, 115, 206, 288, 297, 355
HspAI GCGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 139, 147, 323
LpnPI CCDG 3 cut(s) 105, 122, 306
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 206, 296
MalI GATC 3 cut(s) 141, 149, 325
MboI GATC 3 cut(s) 139, 147, 323
MluCI AATT 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 3 cut(s) 139, 147, 323
NlaIII CATG 7 cut(s) 59, 109, 115, 206, 288, 297, 355
NlaIV GGNNCC 1 cut(s) 238
NspI RCATGY 3 cut(s) 109, 297, 355
PaeI GCATGC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 236
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 1 cut(s) 110
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 139, 147, 323
Sau96I GGNCC 1 cut(s) 236
ScaI AGTACT 1 cut(s) 64
SetI ASST 5 cut(s) 52, 86, 94, 219, 343
SmiMI CAYNNNNRTG 1 cut(s) 110
SphI GCATGC 1 cut(s) 109
Sse9I AATT 1 cut(s) 357
SsiI CCGC 1 cut(s) 131
StyI CCWWGG 3 cut(s) 80, 97, 126
TaaI ACNGT 2 cut(s) 247, 275
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 307, 326
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 134
TscAI CASTG 2 cut(s) 252, 325
TspDTI ATGAA 2 cut(s) 12, 351
TspRI CASTG 2 cut(s) 252, 325
XapI RAATTY 1 cut(s) 357
XceI RCATGY 3 cut(s) 109, 297, 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.