Rmu_sc0003263.1_g000001

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003263.1
OG0025557
Physical Location & Seq
Reverse (-)
7 .. 537
531 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
atgaccagcaacggcgtcgtcatctttgcttcactgggagttacaggtgagttggttgaaggtagcggcggcggtggtggatcgatctcaagagcggtgacctcgcgaattgctggatcgaatttgacaggtcgagttgggtcttcatatctgtttcgtattcgaatctcaaacccagagactatctcctcttcttcctactcaatcttgatctacaacattaacgacttcatgtatgtcgggttttccgggtcgacccaaggaagcaccgaaatccacagcgttgagtggtggagcttcagctcgtatttcaattcaactcccttaatcgggtcagtagcacctcctcctcagaagactaatctgatgaacccaactgccaactcggtcaaatctccaccaccttctttggctctaactggttctgattcagcttctattactagtactacacaaaagaacagtaagtcttcttcttgccataaccagctttgcaagcaaggtccaggaactgttgctaaaagcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

176

Amino Acids

18.29

Weight (kDa)

9.26

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 61 - 103 7.8e-07 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025557)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003263.1_g000001
rosa_samantha Rh7AG164400 Rh7CG172900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 254
AccII CGCG 1 cut(s) 106
AciI CCGC 4 cut(s) 66, 69, 72, 95
AclWI GGATC 2 cut(s) 88, 124
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 329, 330
AgsI TTSAA 3 cut(s) 59, 313, 318
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 5 cut(s) 297, 303, 434, 490, 525
AluI AGCT 5 cut(s) 297, 303, 434, 490, 525
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 88, 124
AlwNI CAGNNNCTG 1 cut(s) 512
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 2 cut(s) 59, 109
AsuII TTCGAA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 503
BarI GAAGNNNNNNTAC 2 cut(s) 457, 489
BbsI GAAGAC 3 cut(s) 135, 362, 462
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 1 cut(s) 444
BisI GCNGC 2 cut(s) 67, 70
BlsI GCNGC 2 cut(s) 68, 71
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 250, 507
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmrFI CCNGG 2 cut(s) 250, 507
BmrI ACTGGG 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 3 cut(s) 135, 362, 462
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu14I TTCGAA 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 330
Bse1I ACTGG 2 cut(s) 39, 424
BseBI CCWGG 1 cut(s) 507
BseCI ATCGAT 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 329, 330
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 2 cut(s) 39, 424
BseRI GAGGAG 3 cut(s) 178, 336, 339
Bsh1236I CGCG 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 83
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 329, 330
BsmAI GTCTC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 80, 84, 116, 210
Bsp68I TCGCGA 1 cut(s) 106
BspACI CCGC 4 cut(s) 66, 69, 72, 95
BspCNI CTCAG 1 cut(s) 364
BspDI ATCGAT 1 cut(s) 83
BspFNI CGCG 1 cut(s) 106
BspPI GGATC 2 cut(s) 88, 124
BspT104I TTCGAA 1 cut(s) 163
BsrBI CCGCTC 1 cut(s) 95
BsrI ACTGG 2 cut(s) 39, 424
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 80, 84, 116, 210
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 2 cut(s) 464, 514
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 1 cut(s) 351
BstEII GGTNACC 1 cut(s) 97
BstFNI CGCG 1 cut(s) 106
BstKTI GATC 4 cut(s) 83, 87, 119, 213
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 80, 84, 116, 210
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstNI CCWGG 1 cut(s) 507
BstPI GGTNACC 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 248, 505
BstUI CGCG 1 cut(s) 106
BstV2I GAAGAC 3 cut(s) 135, 362, 462
Bsu15I ATCGAT 1 cut(s) 83
BsuTUI ATCGAT 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 32
BtuMI TCGCGA 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 497
CaiI CAGNNNCTG 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 503
ClaI ATCGAT 1 cut(s) 83
CseI GACGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 447
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 1 cut(s) 232
CviJI RGCY 6 cut(s) 297, 303, 413, 434, 490, 525
CviKI_1 RGCY 6 cut(s) 297, 303, 413, 434, 490, 525
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 1 cut(s) 351
DpnI GATC 4 cut(s) 82, 86, 118, 212
DpnII GATC 4 cut(s) 80, 84, 116, 210
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 283
Eco91I GGTNACC 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 148, 233, 237, 483
FatI CATG 1 cut(s) 231
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 2 cut(s) 67, 70
Fsp4HI GCNGC 2 cut(s) 67, 70
FspBI CTAG 1 cut(s) 444
GluI GCNGC 2 cut(s) 67, 70
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 235
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 2 cut(s) 165, 428
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 59, 109
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 3 cut(s) 354, 366, 427
Hpy188III TCNNGA 3 cut(s) 90, 105, 208
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 53, 414
HpyCH4III ACNGT 2 cut(s) 464, 514
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpyF3I CTNAG 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 4 cut(s) 80, 84, 116, 210
LmnI GCTCC 1 cut(s) 294
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 40, 97
MalI GATC 4 cut(s) 82, 86, 118, 212
MbiI CCGCTC 1 cut(s) 95
MboI GATC 4 cut(s) 80, 84, 116, 210
MboII GAAGA 6 cut(s) 135, 183, 186, 367, 462, 465
MluCI AATT 3 cut(s) 108, 121, 313
MnlI CCTC 5 cut(s) 112, 199, 354, 357, 360
MseI TTAA 3 cut(s) 222, 326, 529
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 250, 507
MvaI CCWGG 1 cut(s) 507
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 496
NciI CCSGG 1 cut(s) 250
NdeII GATC 4 cut(s) 80, 84, 116, 210
NlaIII CATG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 97
NruI TCGCGA 1 cut(s) 106
NspV TTCGAA 1 cut(s) 163
PfeI GAWTC 2 cut(s) 165, 428
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 2 cut(s) 68, 71
Psp6I CCWGG 1 cut(s) 505
PspEI GGTNACC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 505
PspPI GGNCC 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 512
RruI TCGCGA 1 cut(s) 106
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SalI GTCGAC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 222, 326, 529
SatI GCNGC 2 cut(s) 67, 70
Sau3AI GATC 4 cut(s) 80, 84, 116, 210
Sau96I GGNCC 1 cut(s) 503
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 250, 507
SfuI TTCGAA 1 cut(s) 163
SinI GGWCC 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 3 cut(s) 108, 121, 313
SsiI CCGC 4 cut(s) 66, 69, 72, 95
SspMI CTAG 1 cut(s) 444
StyD4I CCNGG 2 cut(s) 248, 505
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 464, 514
TaqI TCGA 5 cut(s) 83, 119, 133, 163, 254
TaqII GACCGA 1 cut(s) 376
TasI AATT 3 cut(s) 108, 121, 313
TatI WGTACW 1 cut(s) 446
TauI GCSGC 2 cut(s) 69, 72
TfiI GAWTC 2 cut(s) 165, 428
Tru1I TTAA 3 cut(s) 222, 326, 529
Tru9I TTAA 3 cut(s) 222, 326, 529
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 135, 220, 383
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 254
XspI CTAG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.