Rmu_sc0003263.1_g000004

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003263.1
OG0031258
Physical Location & Seq
Reverse (-)
13899 .. 20020
6122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003263.1_g000004.1.cds

Sequence Viewer

Length: 1161 bp
atggggttacttagcaggacagggccatctgggttctcagcctcttccacagcagaggaagttactcaagggattgatggaactggtcttaccgccatcgttacaggaatgagagcttatgtggctttgttttcaacgagaagccgacgcgattatgtggatcatggcagcgcgattatgtcgatcatggcggcgatgattaggatagggctgtttgtcctcgtcgccgagacgaggtgttttcacacgagctacagctgtcgaatagaggataggcccagcgtgattatgtggatcatggcggcggcgttcaggatagggctgtttgtcctcatcgccgggacaaggggcaataaattcatacgccggaatccggtcaccagtccggtagcaggattccagattccggtgactgatcgcagaattccggtcatcgattgcccgattccggtcgccagagtcggaaccacaagcggtcttggtttagagacatcgcgtgttcttgcattgcgtggtgtccatgtagttatggcagtaaggaacacaaatgcaggggaaaatgtcaaagaagcaatccttaaaaaaatccccaatgctagagttgatgttatggagttagatctcagctcattggcatctgtaagaaagtttggagaagagtataattccttgggccttccactgaacatccttatagaacccaatccaaatccaaatcccaatttgaattccgtcctccagaatgacggacagagtcttctggaagcatcgctcgttggagatctgaaattggcgatggagtgcgcccccgctgatcctttcgttggggccgtgtgtctgaaatcgaggactgaggcagaaggagtagagatcattgctaattctcttcatccaggattaatccagaccaatatcgtgcgctttgatggcattttgcattatattgtgaaggtgttgggtgtatttatcattccgttcattaaaactgttcagcagggtgcagcaaccacatgctttgtggcactccatccacaagtgaagggagtaagcggcgaatattttgccgactgtaacattgccaaaccgagcgatcaggccaacgatgcagatttggctaccaaactttgggattttagcttgagcttgactaatctcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

386

Amino Acids

41.55

Weight (kDa)

8.14

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031258)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003263.1_g000004 Rmu_sc0022883.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1125
AccII CGCG 3 cut(s) 150, 173, 496
AciI CCGC 7 cut(s) 93, 191, 302, 305, 474, 810, 1050
AclWI GGATC 3 cut(s) 168, 302, 809
AcsI RAATTY 3 cut(s) 356, 423, 727
AfiI CCNNNNNNNGG 8 cut(s) 234, 345, 373, 392, 406, 448, 824, 1125
AgsI TTSAA 2 cut(s) 135, 727
AjnI CCWGG 1 cut(s) 892
AluBI AGCT 6 cut(s) 116, 252, 258, 627, 1137, 1143
AluI AGCT 6 cut(s) 116, 252, 258, 627, 1137, 1143
Alw26I GTCTC 2 cut(s) 224, 482
AlwI GGATC 3 cut(s) 168, 302, 809
AoxI GGCC 5 cut(s) 23, 275, 673, 828, 1095
ApeKI GCWGC 2 cut(s) 168, 1001
ApoI RAATTY 3 cut(s) 356, 423, 727
AseI ATTAAT 1 cut(s) 899
AspLEI GCGC 3 cut(s) 173, 806, 921
AspS9I GGNCC 4 cut(s) 23, 276, 673, 828
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 370, 421
BauI CACGAG 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 2 cut(s) 180, 1013
BccI CCATC 6 cut(s) 34, 71, 104, 790, 920, 1035
BceAI ACGGC 1 cut(s) 815
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 1 cut(s) 894
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 224, 482
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 253
BglII AGATCT 2 cut(s) 619, 781
BisI GCNGC 6 cut(s) 169, 192, 303, 306, 1002, 1051
BlsI GCNGC 6 cut(s) 170, 193, 304, 307, 1003, 1052
Bme1390I CCNGG 2 cut(s) 340, 894
BmgT120I GGNCC 4 cut(s) 23, 276, 673, 828
BmiI GGNNCC 2 cut(s) 466, 829
BmrFI CCNGG 2 cut(s) 340, 894
BmsI GCATC 3 cut(s) 644, 776, 1093
BpiI GAAGAC 1 cut(s) 749
BpmI CTGGAG 1 cut(s) 722
BpuEI CTTGAG 3 cut(s) 51, 1139, 1159
BpuMI CCSGG 1 cut(s) 340
Bsa29I ATCGAT 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 669
BsaWI WCCGGW 5 cut(s) 373, 385, 406, 427, 448
Bsc4I CCNNNNNNNGG 8 cut(s) 234, 345, 373, 392, 406, 448, 824, 1125
Bse1I ACTGG 2 cut(s) 88, 381
Bse3DI GCAATG 3 cut(s) 506, 873, 1074
BseBI CCWGG 1 cut(s) 894
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 3 cut(s) 687, 889, 1027
BseLI CCNNNNNNNGG 8 cut(s) 234, 345, 373, 392, 406, 448, 824, 1125
BseMI GCAATG 3 cut(s) 506, 873, 1074
BseMII CTCAG 3 cut(s) 51, 637, 843
BseNI ACTGG 2 cut(s) 88, 381
BseXI GCAGC 2 cut(s) 180, 1013
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 1020
Bsh1236I CGCG 3 cut(s) 150, 173, 496
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 5 cut(s) 25, 277, 675, 830, 1097
BshVI ATCGAT 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 7 cut(s) 339, 367, 374, 386, 407, 428, 449
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 8 cut(s) 234, 345, 373, 392, 406, 448, 824, 1125
BsmAI GTCTC 2 cut(s) 224, 482
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 5 cut(s) 25, 277, 675, 830, 1097
Bsp143I GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
BspACI CCGC 7 cut(s) 93, 191, 302, 305, 474, 810, 1050
BspANI GGCC 5 cut(s) 25, 277, 675, 830, 1097
BspCNI CTCAG 3 cut(s) 50, 636, 844
BspDI ATCGAT 1 cut(s) 435
BspFNI CGCG 3 cut(s) 150, 173, 496
BspLI GGNNCC 2 cut(s) 466, 829
BspPI GGATC 3 cut(s) 168, 302, 809
BsrDI GCAATG 3 cut(s) 506, 873, 1074
BsrI ACTGG 2 cut(s) 88, 381
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
BssSI CACGAG 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 894
Bst4CI ACNGT 2 cut(s) 988, 1070
Bst6I CTCTTC 3 cut(s) 49, 651, 891
BstDEI CTNAG 4 cut(s) 11, 37, 623, 852
BstEII GGTNACC 1 cut(s) 376
BstF5I GGATG 3 cut(s) 687, 889, 1027
BstFNI CGCG 3 cut(s) 150, 173, 496
BstHHI GCGC 3 cut(s) 173, 806, 921
BstKTI GATC 9 cut(s) 163, 186, 297, 418, 622, 784, 817, 873, 1093
BstMAI GTCTC 2 cut(s) 224, 482
BstMBI GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 4 cut(s) 122, 927, 1103, 1112
BstNI CCWGG 1 cut(s) 894
BstNSI RCATGY 1 cut(s) 1014
BstPI GGTNACC 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 338, 892
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 3 cut(s) 150, 173, 496
BstV1I GCAGC 2 cut(s) 180, 1013
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 2 cut(s) 619, 781
BstYI RGATCY 2 cut(s) 619, 781
Bsu15I ATCGAT 1 cut(s) 435
BsuRI GGCC 5 cut(s) 25, 277, 675, 830, 1097
BsuTUI ATCGAT 1 cut(s) 435
BtgZI GCGATG 5 cut(s) 209, 319, 477, 753, 809
BtsCI GGATG 3 cut(s) 687, 889, 1027
BtsIMutI CAGTG 1 cut(s) 680
CfoI GCGC 3 cut(s) 173, 806, 921
Cfr13I GGNCC 4 cut(s) 23, 276, 673, 828
ClaI ATCGAT 1 cut(s) 435
CseI GACGC 1 cut(s) 156
CspCI CAANNNNNGTGG 2 cut(s) 997, 1032
CviAII CATG 5 cut(s) 164, 187, 298, 521, 1011
DdeI CTNAG 4 cut(s) 11, 37, 623, 852
DpnI GATC 9 cut(s) 162, 185, 296, 417, 621, 783, 816, 872, 1092
DpnII GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
Eam1104I CTCTTC 3 cut(s) 49, 651, 891
EarI CTCTTC 3 cut(s) 49, 651, 891
Eco130I CCWWGG 1 cut(s) 669
Eco91I GGTNACC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 376
EcoRI GAATTC 2 cut(s) 423, 727
EcoRII CCWGG 1 cut(s) 892
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 5 cut(s) 167, 190, 301, 524, 1014
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 355
FatI CATG 5 cut(s) 163, 186, 297, 520, 1010
FauI CCCGC 1 cut(s) 817
Fnu4HI GCNGC 6 cut(s) 169, 192, 303, 306, 1002, 1051
FokI GGATG 3 cut(s) 674, 876, 1014
Fsp4HI GCNGC 6 cut(s) 169, 192, 303, 306, 1002, 1051
FspBI CTAG 1 cut(s) 597
GlaI GCGC 3 cut(s) 172, 805, 920
GluI GCNGC 6 cut(s) 169, 192, 303, 306, 1002, 1051
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 5 cut(s) 25, 277, 675, 830, 1097
HapII CCGG 7 cut(s) 339, 367, 374, 386, 407, 428, 449
HgaI GACGC 1 cut(s) 156
HhaI GCGC 3 cut(s) 173, 806, 921
Hin1II CATG 5 cut(s) 167, 190, 301, 524, 1014
Hin6I GCGC 3 cut(s) 171, 804, 919
HinP1I GCGC 3 cut(s) 171, 804, 919
HinfI GANTC 6 cut(s) 370, 396, 403, 445, 459, 754
HpaII CCGG 7 cut(s) 339, 367, 374, 386, 407, 428, 449
HphI GGTGA 2 cut(s) 370, 421
Hpy188I TCNGA 3 cut(s) 464, 786, 840
Hpy188III TCNNGA 5 cut(s) 313, 400, 739, 761, 904
Hpy99I CGWCG 2 cut(s) 150, 227
HpyAV CCTTC 4 cut(s) 686, 854, 943, 1033
HpyCH4III ACNGT 2 cut(s) 988, 1070
HpyCH4V TGCA 5 cut(s) 506, 551, 937, 1001, 1106
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 927, 1103, 1112
HpyF3I CTNAG 4 cut(s) 11, 37, 623, 852
Hsp92II CATG 5 cut(s) 167, 190, 301, 524, 1014
HspAI GCGC 3 cut(s) 171, 804, 919
Kzo9I GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
Lsp1109I GCAGC 2 cut(s) 180, 1013
LweI GCATC 3 cut(s) 644, 776, 1093
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 6 cut(s) 6, 61, 100, 376, 409, 1070
MalI GATC 9 cut(s) 162, 185, 296, 417, 621, 783, 816, 872, 1092
MboI GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
MboII GAAGA 4 cut(s) 36, 668, 749, 878
MflI RGATCY 2 cut(s) 619, 781
MluCI AATT 7 cut(s) 356, 423, 664, 721, 727, 788, 880
MlyI GAGTC 2 cut(s) 468, 763
MmeI TCCRAC 2 cut(s) 442, 757
MnlI CCTC 9 cut(s) 49, 52, 228, 230, 262, 341, 746, 840, 847
MseI TTAA 3 cut(s) 579, 899, 981
MspA1I CMGCKG 2 cut(s) 258, 812
MspI CCGG 7 cut(s) 339, 367, 374, 386, 407, 428, 449
MspR9I CCNGG 2 cut(s) 340, 894
MvaI CCWGG 1 cut(s) 894
MvnI CGCG 3 cut(s) 150, 173, 496
MwoI GCNNNNNNNGC 4 cut(s) 122, 927, 1103, 1112
NciI CCSGG 1 cut(s) 340
NdeII GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
NlaIII CATG 5 cut(s) 167, 190, 301, 524, 1014
NlaIV GGNNCC 2 cut(s) 466, 829
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 376, 409
NspI RCATGY 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 828
PfeI GAWTC 4 cut(s) 370, 396, 403, 445
PflFI GACNNNGTC 1 cut(s) 753
PflMI CCANNNNNTGG 1 cut(s) 1125
PfoI TCCNGGA 1 cut(s) 892
PkrI GCNGC 6 cut(s) 170, 193, 304, 307, 1003, 1052
PleI GAGTC 2 cut(s) 467, 762
PpsI GAGTC 2 cut(s) 467, 762
PshBI ATTAAT 1 cut(s) 899
Psp6I CCWGG 1 cut(s) 892
PspEI GGTNACC 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 892
PspN4I GGNNCC 2 cut(s) 466, 829
PspPI GGNCC 4 cut(s) 23, 276, 673, 828
PsrI GAACNNNNNNTAC 2 cut(s) 73, 105
PsuI RGATCY 2 cut(s) 619, 781
PsyI GACNNNGTC 1 cut(s) 753
PvuII CAGCTG 1 cut(s) 258
SaqAI TTAA 3 cut(s) 579, 899, 981
SatI GCNGC 6 cut(s) 169, 192, 303, 306, 1002, 1051
Sau3AI GATC 9 cut(s) 160, 183, 294, 415, 619, 781, 814, 870, 1090
Sau96I GGNCC 4 cut(s) 23, 276, 673, 828
SchI GAGTC 2 cut(s) 468, 763
ScrFI CCNGG 2 cut(s) 340, 894
SetI ASST 8 cut(s) 118, 239, 254, 260, 629, 954, 1139, 1145
SfaNI GCATC 3 cut(s) 644, 776, 1093
SfcI CTRYAG 1 cut(s) 253
SmlI CTYRAG 3 cut(s) 66, 1138, 1154
SmoI CTYRAG 3 cut(s) 66, 1138, 1154
Sse9I AATT 7 cut(s) 356, 423, 664, 721, 727, 788, 880
SsiI CCGC 7 cut(s) 93, 191, 302, 305, 474, 810, 1050
SspI AATATT 1 cut(s) 1058
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 338, 892
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 2 cut(s) 988, 1070
TaqI TCGA 4 cut(s) 182, 262, 435, 845
TasI AATT 7 cut(s) 356, 423, 664, 721, 727, 788, 880
TauI GCSGC 4 cut(s) 194, 305, 308, 1053
TfiI GAWTC 4 cut(s) 370, 396, 403, 445
Tru1I TTAA 3 cut(s) 579, 899, 981
Tru9I TTAA 3 cut(s) 579, 899, 981
TscAI CASTG 1 cut(s) 687
TseFI GTSAC 2 cut(s) 376, 409
TseI GCWGC 2 cut(s) 168, 1001
Tsp45I GTSAC 2 cut(s) 376, 409
TspDTI ATGAA 3 cut(s) 349, 878, 967
TspGWI ACGGA 3 cut(s) 721, 762, 963
TspRI CASTG 1 cut(s) 687
Tth111I GACNNNGTC 1 cut(s) 753
Van91I CCANNNNNTGG 1 cut(s) 1125
VspI ATTAAT 1 cut(s) 899
XapI RAATTY 3 cut(s) 356, 423, 727
XceI RCATGY 1 cut(s) 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.