Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022883.1

Orthogroup ID

OG0031258

Physical Location & Seq

Genomic Coordinates Reverse (-)

10914 .. 13362

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022883.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgagagattatgtggctttgttttcaacgagcagccgacgcgattatgtggatcatggcagcacgattatgtcgatcatggcggcgatgattaggataaggctgtttgtccttgtcgccgggacgaggtgctttcacacgagctacagctatcgaatagaggataggcccagcgtgattatgtggatcatggcggcggcattcaggatagggctgtttgtcctcatcgccgggacaaggggcaataaattcatacgccggaatccggtcaccagtccggtagcaggattccagattccggtgactgatcgcagaattccggtcatcgattgcccgattccggtcgccagagtcggaaccacaagcggtcttggtttagagacatcgcgtgttcttgcattgcgtggtgtccatgtagttatggcagtaaggaacacaaatgcaggggaaaatgtcaaagaagcaatccttaaaaaaatccccaatgctagagttgatgttatggagttagatctcagctcattggcatctgtaagaaagtttggagaagagtataattccttgggccttccactgaacatccttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

196

Amino Acids

21.73

Weight (kDa)

10.31

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031258)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003263.1_g000004 Rmu_sc0022883.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	42, 388
AciI	CCGC	4 cut(s)	83, 194, 197, 366
AclWI	GGATC	2 cut(s)	60, 194
AcsI	RAATTY	2 cut(s)	248, 315
AfiI	CCNNNNNNNGG	6 cut(s)	126, 237, 265, 284, 298, 340
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	3 cut(s)	144, 150, 519
AluI	AGCT	3 cut(s)	144, 150, 519
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	2 cut(s)	60, 194
AoxI	GGCC	2 cut(s)	167, 565
ApeKI	GCWGC	2 cut(s)	33, 60
ApoI	RAATTY	2 cut(s)	248, 315
AspS9I	GGNCC	2 cut(s)	168, 565
AsuC2I	CCSGG	2 cut(s)	121, 232
AsuHPI	GGTGA	2 cut(s)	262, 313
BauI	CACGAG	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	45, 72
BcnI	CCSGG	2 cut(s)	121, 232
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	145
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	5 cut(s)	34, 61, 84, 195, 198
BlsI	GCNGC	5 cut(s)	35, 62, 85, 196, 199
Bme1390I	CCNGG	2 cut(s)	121, 232
BmgT120I	GGNCC	2 cut(s)	168, 565
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	121, 232
BmsI	GCATC	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	121, 232
Bsa29I	ATCGAT	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	5 cut(s)	265, 277, 298, 319, 340
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 237, 265, 284, 298, 340
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	6 cut(s)	126, 237, 265, 284, 298, 340
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	529
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	45, 72
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	42, 388
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	169, 567
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	345
BsiSI	CCGG	8 cut(s)	120, 231, 259, 266, 278, 299, 320, 341
BslFI	GGGAC	2 cut(s)	136, 247
BslI	CCNNNNNNNGG	6 cut(s)	126, 237, 265, 284, 298, 340
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	136, 247
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	169, 567
Bsp143I	GATC	5 cut(s)	52, 75, 186, 307, 511
BspACI	CCGC	4 cut(s)	83, 194, 197, 366
BspANI	GGCC	2 cut(s)	169, 567
BspCNI	CTCAG	1 cut(s)	528
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	2 cut(s)	42, 388
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	60, 194
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	5 cut(s)	52, 75, 186, 307, 511
BssSI	CACGAG	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	515
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	2 cut(s)	42, 388
BstKTI	GATC	5 cut(s)	55, 78, 189, 310, 514
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	5 cut(s)	52, 75, 186, 307, 511
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	2 cut(s)	119, 230
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	2 cut(s)	42, 388
BstV1I	GCAGC	2 cut(s)	45, 72
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	169, 567
BsuTUI	ATCGAT	1 cut(s)	327
BtgZI	GCGATG	3 cut(s)	101, 211, 369
BtsCI	GGATG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	572
Cfr13I	GGNCC	2 cut(s)	168, 565
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	48
CviAII	CATG	4 cut(s)	56, 79, 190, 413
CviJI	RGCY	9 cut(s)	17, 36, 103, 144, 150, 169, 214, 519, 567
CviKI_1	RGCY	9 cut(s)	17, 36, 103, 144, 150, 169, 214, 519, 567
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	5 cut(s)	54, 77, 188, 309, 513
DpnII	GATC	5 cut(s)	52, 75, 186, 307, 511
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	4 cut(s)	59, 82, 193, 416
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	136, 247
FatI	CATG	4 cut(s)	55, 78, 189, 412
Fnu4HI	GCNGC	5 cut(s)	34, 61, 84, 195, 198
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	5 cut(s)	34, 61, 84, 195, 198
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	5 cut(s)	34, 61, 84, 195, 198
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	169, 567
HapII	CCGG	8 cut(s)	120, 231, 259, 266, 278, 299, 320, 341
HgaI	GACGC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	59, 82, 193, 416
HinfI	GANTC	5 cut(s)	262, 288, 295, 337, 351
HpaII	CCGG	8 cut(s)	120, 231, 259, 266, 278, 299, 320, 341
HphI	GGTGA	2 cut(s)	262, 313
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	2 cut(s)	205, 292
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	578
HpyCH4V	TGCA	2 cut(s)	398, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	1 cut(s)	515
Hsp92II	CATG	4 cut(s)	59, 82, 193, 416
Kzo9I	GATC	5 cut(s)	52, 75, 186, 307, 511
Lsp1109I	GCAGC	2 cut(s)	45, 72
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	268, 301
MalI	GATC	5 cut(s)	54, 77, 188, 309, 513
MboI	GATC	5 cut(s)	52, 75, 186, 307, 511
MboII	GAAGA	1 cut(s)	560
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	3 cut(s)	248, 315, 556
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	3 cut(s)	120, 154, 233
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	68, 584
MspI	CCGG	8 cut(s)	120, 231, 259, 266, 278, 299, 320, 341
MspR9I	CCNGG	2 cut(s)	121, 232
Mva1269I	GAATGC	1 cut(s)	200
MvnI	CGCG	2 cut(s)	42, 388
MwoI	GCNNNNNNNGC	1 cut(s)	39
NciI	CCSGG	2 cut(s)	121, 232
NdeII	GATC	5 cut(s)	52, 75, 186, 307, 511
NlaIII	CATG	4 cut(s)	59, 82, 193, 416
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	268, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	4 cut(s)	262, 288, 295, 337
PkrI	GCNGC	5 cut(s)	35, 62, 85, 196, 199
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	168, 565
PsuI	RGATCY	1 cut(s)	511
RseI	CAYNNNNRTG	2 cut(s)	68, 584
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	5 cut(s)	34, 61, 84, 195, 198
Sau3AI	GATC	5 cut(s)	52, 75, 186, 307, 511
Sau96I	GGNCC	2 cut(s)	168, 565
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	121, 232
SetI	ASST	4 cut(s)	131, 146, 152, 521
SfaNI	GCATC	1 cut(s)	536
SfcI	CTRYAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	68, 584
Sse9I	AATT	3 cut(s)	248, 315, 556
SsiI	CCGC	4 cut(s)	83, 194, 197, 366
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	119, 230
StyI	CCWWGG	1 cut(s)	561
TaqI	TCGA	3 cut(s)	74, 154, 327
TasI	AATT	3 cut(s)	248, 315, 556
TauI	GCSGC	3 cut(s)	86, 197, 200
TfiI	GAWTC	4 cut(s)	262, 288, 295, 337
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	268, 301
TseI	GCWGC	2 cut(s)	33, 60
Tsp45I	GTSAC	2 cut(s)	268, 301
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	579
XapI	RAATTY	2 cut(s)	248, 315
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.