Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003325.1

Orthogroup ID

OG0025560

Physical Location & Seq

Genomic Coordinates Reverse (-)

9523 .. 10632

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003325.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ctgtgtatctacgcctttgactatgatggtggactccatggctactaccatatacaacaggagatccagagcccggagttaaccccgataagtactattggtgctgccgccattgagggagatcaagagatggctgtggcgggtggcggacatggacattttcattcacatgatcatcaagtcaaaggaggaagcgagccacagctgtcacgctatcgcgttgttgccatggtgttggaactgggaattattgttcactcggttgttatcgggctctctcttggagcttcaaacaacacttgcaccattaaaggtctcgtagctgccctttgcttccatcaaatgtttgaaggcatgggcattggtggttgcattctccaggctgagtataagttcatgaagaaggcaataatggtgttcttcttcgcagcaacaaccccatttggaattgcactaagccggaatggccatttcaaaaatgtacaaagaaaacagtccaagtgcattagtgacagtagggactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

175

Amino Acids

18.96

Weight (kDa)

6.85

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025560)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003325.1_g000002
rosa_samantha	Rh5AG143400
rosa_wichuraiana	Rw5G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	3 cut(s)	108, 140, 147
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	466
AfaI	GTAC	2 cut(s)	94, 483
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	291, 350, 475
AjnI	CCWGG	1 cut(s)	378
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	205, 287, 323
AluI	AGCT	3 cut(s)	205, 287, 323
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	3 cut(s)	104, 323, 428
AsuC2I	CCSGG	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	468
BanII	GRGCYC	2 cut(s)	74, 276
BbvI	GCAGC	3 cut(s)	91, 310, 440
BccI	CCATC	3 cut(s)	20, 124, 345
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	465
BisI	GCNGC	4 cut(s)	105, 108, 324, 429
BlsI	GCNGC	4 cut(s)	106, 109, 325, 430
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	2 cut(s)	74, 380
BmrFI	CCNGG	2 cut(s)	74, 380
BmrI	ACTGGG	1 cut(s)	251
BmuI	ACTGGG	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	37, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	37, 228
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	91, 310, 440
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	74, 460
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	468
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	74, 276
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	63, 121, 172
Bsp19I	CCATGG	2 cut(s)	37, 228
BspACI	CCGC	3 cut(s)	108, 140, 147
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	396
BspPI	GGATC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	37, 228
BssMI	GATC	3 cut(s)	63, 121, 172
BssT1I	CCWWGG	2 cut(s)	37, 228
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	495, 515
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	384, 455
BstDSI	CCRYGG	2 cut(s)	37, 228
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	66, 124, 175
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	3 cut(s)	63, 121, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	72, 378
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	3 cut(s)	91, 310, 440
BstX2I	RGATCY	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	468
BtgI	CCRYGG	2 cut(s)	37, 228
Cac8I	GCNNGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	93, 482
CviAII	CATG	6 cut(s)	38, 152, 170, 229, 355, 397
CviQI	GTAC	2 cut(s)	93, 482
DdeI	CTNAG	2 cut(s)	384, 455
DpnI	GATC	3 cut(s)	65, 123, 174
DpnII	GATC	3 cut(s)	63, 121, 172
EaeI	YGGCCR	1 cut(s)	466
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	37, 228
Eco24I	GRGCYC	2 cut(s)	74, 276
Eco31I	GGTCTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	37, 228
EcoT38I	GRGCYC	2 cut(s)	74, 276
ErhI	CCWWGG	2 cut(s)	37, 228
FaeI	CATG	6 cut(s)	41, 155, 173, 232, 358, 400
FatI	CATG	6 cut(s)	37, 151, 169, 228, 354, 396
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	4 cut(s)	105, 108, 324, 429
FriOI	GRGCYC	2 cut(s)	74, 276
Fsp4HI	GCNGC	4 cut(s)	105, 108, 324, 429
GluI	GCNGC	4 cut(s)	105, 108, 324, 429
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	2 cut(s)	74, 460
Hin1II	CATG	6 cut(s)	41, 155, 173, 232, 358, 400
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	33
HpaI	GTTAAC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	74, 460
Hpy166II	GTNNAC	3 cut(s)	32, 81, 256
Hpy188III	TCNNGA	3 cut(s)	67, 125, 397
Hpy8I	GTNNAC	3 cut(s)	32, 81, 256
HpyAV	CCTTC	2 cut(s)	344, 397
HpyCH4III	ACNGT	2 cut(s)	495, 515
HpyCH4V	TGCA	4 cut(s)	303, 372, 452, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	2 cut(s)	384, 455
Hsp92II	CATG	6 cut(s)	41, 155, 173, 232, 358, 400
Ksp22I	TGATCA	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	63, 121, 172
LmnI	GCTCC	1 cut(s)	284
LpnPI	CCDG	7 cut(s)	44, 80, 87, 227, 365, 392, 473
Lsp1109I	GCAGC	3 cut(s)	91, 310, 440
MaeIII	GTNAC	2 cut(s)	207, 509
MalI	GATC	3 cut(s)	65, 123, 174
MboI	GATC	3 cut(s)	63, 121, 172
MboII	GAAGA	3 cut(s)	412, 412, 415
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	74, 276
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	2 cut(s)	246, 447
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	109, 182
Mox20I	TGGCCA	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	2 cut(s)	80, 309
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	2 cut(s)	74, 460
MspR9I	CCNGG	2 cut(s)	74, 380
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	2 cut(s)	37, 228
NdeII	GATC	3 cut(s)	63, 121, 172
NlaIII	CATG	6 cut(s)	41, 155, 173, 232, 358, 400
NmuCI	GTSAC	2 cut(s)	207, 509
PagI	TCATGA	1 cut(s)	396
PctI	GAATGC	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	106, 109, 325, 430
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	94, 483
RsaNI	GTAC	2 cut(s)	93, 482
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	80, 309
SatI	GCNGC	4 cut(s)	105, 108, 324, 429
Sau3AI	GATC	3 cut(s)	63, 121, 172
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	74, 380
SduI	GDGCHC	2 cut(s)	74, 276
SetI	ASST	4 cut(s)	207, 289, 316, 325
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	246, 447
SsiI	CCGC	3 cut(s)	108, 140, 147
StyD4I	CCNGG	2 cut(s)	72, 378
StyI	CCWWGG	2 cut(s)	37, 228
TaaI	ACNGT	2 cut(s)	495, 515
TasI	AATT	2 cut(s)	246, 447
TatI	WGTACW	2 cut(s)	92, 481
TauI	GCSGC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	80, 309
Tru9I	TTAA	2 cut(s)	80, 309
TseFI	GTSAC	2 cut(s)	207, 509
TseI	GCWGC	3 cut(s)	104, 323, 428
Tsp45I	GTSAC	2 cut(s)	207, 509
TspDTI	ATGAA	3 cut(s)	152, 385, 413
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.