Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0025560

Physical Location & Seq

Genomic Coordinates Reverse (-)

15035424 .. 15036942

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCCACTACTACTTCACTTTCCAAAGTACTCCTCCCAATCTTCGTCATAATCCTCGTCTCCGCACTCATTCCTCAAGCTCATTCGCAATCCGAGAGTGATGAATGCGAGTCTGAAACTACCAACTCCTGCCACGACAAGGCAGGAGCTGTGCCACTCAAAATCATAGCCATTGCCTCAATCCTGGTCACCAGCATGATAGAAGCCGTGGCACAAGTTCCCTTTCACTGGATTTTTTGCTATGTTGTCCGCTATTGTGACTATGATAGTGGACTCCATGGCTACTACCATATACAGCAGGAGATCCAGAGCCCGGAGTTAACCCCGATACGTACTATTGGTGCTGCCGCCATTGAGGGAGATCAAGAGATGGCTGTGGCGGGTGGCGGACATGGACATTTTCATTCACATGATCATCAAGTCAAAGGAGGAAGCGAGCCACAGCTGTCACGCTATCGCGTTGTTGCCATGGTGTTGGAACTGGGAATTATTGTTCACTCGGTTGTTATCGGGCTTTCTCTTGGAGCTTCAAACAACACTAGCACCATTAAAGGTCTCGTAGCTGCCCTTTGCTTCCATCAAATGTTTGAAGGCATGGGCATTGGTGGTTGCATTCTCCAGGCTGAGTATAAGTTCATGAAGAAGGCAATAATGGTGTTCTTCTTCACAGCAACAACCCCATTTGGAATTGCACTGGGCCGGAATGGCCATTTCAAAAATGTACAAAGAAAACAGTCCAAGTGCATTAGTGACGGTAGGGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006829 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0012505 GO:0015075 GO:0015318 GO:0015675 GO:0015691 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070838 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071577 GO:0071731 GO:0071732 GO:0071944 GO:0072509 GO:0072511 GO:0097366 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

255

Amino Acids

27.64

Weight (kDa)

6.48

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	22 - 233	1.2e-34	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0025560)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003325.1_g000002
rosa_samantha	Rh5AG143400
rosa_wichuraiana	Rw5G012710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	459
AciI	CCGC	5 cut(s)	63, 250, 348, 380, 387
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	2 cut(s)	3, 706
AfaI	GTAC	3 cut(s)	30, 334, 723
AfiI	CCNNNNNNNGG	3 cut(s)	139, 228, 313
AgsI	TTSAA	3 cut(s)	531, 590, 715
AjnI	CCWGG	2 cut(s)	183, 618
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	5 cut(s)	80, 149, 445, 527, 563
AluI	AGCT	5 cut(s)	80, 149, 445, 527, 563
Alw26I	GTCTC	2 cut(s)	64, 560
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	3, 697, 706
ApeKI	GCWGC	2 cut(s)	344, 563
AspS9I	GGNCC	1 cut(s)	697
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	181
BalI	TGGCCA	2 cut(s)	5, 708
BanII	GRGCYC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	331, 550
BccI	CCATC	2 cut(s)	364, 585
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	185, 620
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	64, 560
BfaI	CTAG	1 cut(s)	540
BglI	GCCNNNNNGGC	1 cut(s)	705
BisI	GCNGC	3 cut(s)	345, 348, 564
BlsI	GCNGC	3 cut(s)	346, 349, 565
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	185, 314, 620
BmgT120I	GGNCC	1 cut(s)	697
BmrFI	CCNGG	3 cut(s)	185, 314, 620
BmrI	ACTGGG	2 cut(s)	491, 704
BmuI	ACTGGG	2 cut(s)	491, 704
BpmI	CTGGAG	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	207, 277, 468
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 228, 313
Bse1I	ACTGG	3 cut(s)	233, 486, 699
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	185, 620
BseDI	CCNNGG	3 cut(s)	207, 277, 468
BseLI	CCNNNNNNNGG	3 cut(s)	139, 228, 313
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	3 cut(s)	233, 486, 699
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	331, 550
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	5, 699, 708
BsiSI	CCGG	2 cut(s)	314, 700
BslI	CCNNNNNNNGG	3 cut(s)	139, 228, 313
BsmAI	GTCTC	2 cut(s)	64, 560
BsmBI	CGTCTC	1 cut(s)	64
BsmI	GAATGC	2 cut(s)	110, 612
BsnI	GGCC	3 cut(s)	5, 699, 708
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	721
Bsp143I	GATC	3 cut(s)	303, 361, 412
Bsp19I	CCATGG	2 cut(s)	277, 468
BspACI	CCGC	5 cut(s)	63, 250, 348, 380, 387
BspANI	GGCC	3 cut(s)	5, 699, 708
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	636
BspPI	GGATC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	721
BsrI	ACTGG	3 cut(s)	233, 486, 699
BssECI	CCNNGG	3 cut(s)	207, 277, 468
BssMI	GATC	3 cut(s)	303, 361, 412
BssT1I	CCWWGG	2 cut(s)	277, 468
Bst2UI	CCWGG	2 cut(s)	185, 620
Bst4CI	ACNGT	2 cut(s)	735, 755
BstAUI	TGTACA	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	624
BstDSI	CCRYGG	3 cut(s)	207, 277, 468
BstEII	GGTNACC	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	3 cut(s)	306, 364, 415
BstMAI	GTCTC	2 cut(s)	64, 560
BstMBI	GATC	3 cut(s)	303, 361, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	705
BstNI	CCWGG	2 cut(s)	185, 620
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	3 cut(s)	183, 312, 618
BstSNI	TACGTA	1 cut(s)	332
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	331, 550
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	5, 699, 708
BtgI	CCRYGG	3 cut(s)	207, 277, 468
BtsIMutI	CAGTG	2 cut(s)	226, 692
Cac8I	GCNNGC	1 cut(s)	437
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	29, 333, 722
CviAII	CATG	7 cut(s)	196, 278, 392, 410, 469, 595, 637
CviQI	GTAC	3 cut(s)	29, 333, 722
DdeI	CTNAG	1 cut(s)	624
DpnI	GATC	3 cut(s)	305, 363, 414
DpnII	GATC	3 cut(s)	303, 361, 412
EaeI	YGGCCR	2 cut(s)	3, 706
EciI	GGCGGA	1 cut(s)	402
Eco105I	TACGTA	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	277, 468
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	560
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	183, 618
EcoT14I	CCWWGG	2 cut(s)	277, 468
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	277, 468
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	7 cut(s)	199, 281, 395, 413, 472, 598, 640
FatI	CATG	7 cut(s)	195, 277, 391, 409, 468, 594, 636
FauI	CCCGC	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	345, 348, 564
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	345, 348, 564
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	3 cut(s)	345, 348, 564
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	5, 699, 708
HapII	CCGG	2 cut(s)	314, 700
Hin1II	CATG	7 cut(s)	199, 281, 395, 413, 472, 598, 640
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	110, 273
HpaI	GTTAAC	1 cut(s)	321
HpaII	CCGG	2 cut(s)	314, 700
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	272, 321, 496
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	3 cut(s)	307, 365, 637
Hpy8I	GTNNAC	3 cut(s)	272, 321, 496
HpyAV	CCTTC	2 cut(s)	584, 637
HpyCH4III	ACNGT	2 cut(s)	735, 755
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	3 cut(s)	612, 692, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	705
HpyF3I	CTNAG	1 cut(s)	624
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	7 cut(s)	199, 281, 395, 413, 472, 598, 640
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	303, 361, 412
LmnI	GCTCC	2 cut(s)	146, 524
Lsp1109I	GCAGC	2 cut(s)	331, 550
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	4 cut(s)	187, 257, 447, 749
MalI	GATC	3 cut(s)	305, 363, 414
MboI	GATC	3 cut(s)	303, 361, 412
MboII	GAAGA	4 cut(s)	34, 652, 652, 655
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	314
MlsI	TGGCCA	2 cut(s)	5, 708
MluCI	AATT	2 cut(s)	486, 687
MluNI	TGGCCA	2 cut(s)	5, 708
MlyI	GAGTC	2 cut(s)	119, 267
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	6 cut(s)	44, 65, 84, 187, 349, 422
Mox20I	TGGCCA	2 cut(s)	5, 708
MscI	TGGCCA	2 cut(s)	5, 708
MseI	TTAA	2 cut(s)	320, 549
MslI	CAYNNNNRTG	2 cut(s)	194, 408
Msp20I	TGGCCA	2 cut(s)	5, 708
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	2 cut(s)	314, 700
MspR9I	CCNGG	3 cut(s)	185, 314, 620
Mva1269I	GAATGC	2 cut(s)	110, 612
MvaI	CCWGG	2 cut(s)	185, 620
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	705
NciI	CCSGG	1 cut(s)	314
NcoI	CCATGG	2 cut(s)	277, 468
NdeII	GATC	3 cut(s)	303, 361, 412
NlaIII	CATG	7 cut(s)	199, 281, 395, 413, 472, 598, 640
NmuCI	GTSAC	4 cut(s)	187, 257, 447, 749
PagI	TCATGA	1 cut(s)	636
PctI	GAATGC	2 cut(s)	110, 612
PkrI	GCNGC	3 cut(s)	346, 349, 565
PleI	GAGTC	2 cut(s)	118, 267
PpsI	GAGTC	2 cut(s)	118, 267
Ppu21I	YACGTR	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	183, 618
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	183, 618
PspPI	GGNCC	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	3 cut(s)	30, 334, 723
RsaNI	GTAC	3 cut(s)	29, 333, 722
RseI	CAYNNNNRTG	2 cut(s)	194, 408
SaqAI	TTAA	2 cut(s)	320, 549
SatI	GCNGC	3 cut(s)	345, 348, 564
Sau3AI	GATC	3 cut(s)	303, 361, 412
Sau96I	GGNCC	1 cut(s)	697
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	2 cut(s)	119, 267
ScrFI	CCNGG	3 cut(s)	185, 314, 620
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	7 cut(s)	82, 151, 334, 447, 529, 556, 565
SfiI	GGCCNNNNNGGCC	1 cut(s)	705
SmiMI	CAYNNNNRTG	2 cut(s)	194, 408
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SnaBI	TACGTA	1 cut(s)	332
Sse9I	AATT	2 cut(s)	486, 687
SsiI	CCGC	5 cut(s)	63, 250, 348, 380, 387
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	183, 312, 618
StyI	CCWWGG	2 cut(s)	277, 468
TaaI	ACNGT	2 cut(s)	735, 755
TaiI	ACGT	1 cut(s)	334
TasI	AATT	2 cut(s)	486, 687
TatI	WGTACW	2 cut(s)	28, 721
TauI	GCSGC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	320, 549
Tru9I	TTAA	2 cut(s)	320, 549
TscAI	CASTG	2 cut(s)	233, 699
TseFI	GTSAC	4 cut(s)	187, 257, 447, 749
TseI	GCWGC	2 cut(s)	344, 563
Tsp45I	GTSAC	4 cut(s)	187, 257, 447, 749
TspDTI	ATGAA	4 cut(s)	117, 392, 625, 653
TspRI	CASTG	2 cut(s)	233, 699
XspI	CTAG	1 cut(s)	540
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.