Rmu_sc0003342.1_g000040

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003342.1
Physical Location & Seq
Reverse (-)
158845 .. 159213
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003342.1_g000040.1.cds

Sequence Viewer

Length: 369 bp
atgagtcctcaccacctcgttgcaatccttgctctcctctttcctcttctcacagctgcagtagacaaaagtggtgactctgctccactcggtgcttggacacccttgaagaacattagcgaccctcaagtcacagagatcgcaaaatatgcggttaaagtatacaacagccaaaatcataagaacttgatctttcagaaggtgatcaagggatattaccaaattgaatcaggaagactttataaacttgacgttagagtcaaggatgagaagtctgttcagttccccacaaccgattaccaagctattgtcttgacaagaggatctttctttaaaaaattggtctcctttcgtcagatctcaaattaa

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

9.7

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0019374)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0140821
rosa_multiflora Rmu_sc0003342.1_g000040
rosa_rugosa Rorug02G0365400
rosa_samantha Rh2AG416700 Rh2BG426300 Rh2CG402900 Rh2DG436200
rosa_wichuraiana Rw2G034090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AasI GACNNNNNNGTC 2 cut(s) 128, 257
AccI GTMKAC 2 cut(s) 63, 162
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 109, 227
AluBI AGCT 2 cut(s) 56, 305
AluI AGCT 2 cut(s) 56, 305
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 86, 214
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 43
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 357
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 349
BseGI GGATG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 349
Bsp143I GATC 5 cut(s) 138, 189, 204, 323, 357
BspACI CCGC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 349
BssMI GATC 5 cut(s) 138, 189, 204, 323, 357
BssNAI GTATAC 1 cut(s) 163
Bst1107I GTATAC 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 2 cut(s) 29, 149
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 5 cut(s) 141, 192, 207, 326, 360
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 5 cut(s) 138, 189, 204, 323, 357
BstMWI GCNNNNNNNGC 2 cut(s) 29, 149
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 323, 357
BstYI RGATCY 2 cut(s) 323, 357
BstZ17I GTATAC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 271
CviJI RGCY 3 cut(s) 56, 171, 305
CviKI_1 RGCY 3 cut(s) 56, 171, 305
DpnI GATC 5 cut(s) 140, 191, 206, 325, 359
DpnII GATC 5 cut(s) 138, 189, 204, 323, 357
DraI TTTAAA 1 cut(s) 334
DraIII CACNNNGTG 1 cut(s) 92
DrdI GACNNNNNNGTC 2 cut(s) 128, 257
DseDI GACNNNNNNGTC 2 cut(s) 128, 257
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 349
FaiI YATR 4 cut(s) 150, 163, 180, 243
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 2 cut(s) 63, 162
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HinfI GANTC 4 cut(s) 4, 77, 227, 258
HphI GGTGA 2 cut(s) 86, 214
Hpy166II GTNNAC 2 cut(s) 64, 163
Hpy188I TCNGA 2 cut(s) 198, 357
Hpy188III TCNNGA 2 cut(s) 231, 313
Hpy8I GTNNAC 2 cut(s) 64, 163
HpyAV CCTTC 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 23, 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 149
HpySE526I ACGT 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 5 cut(s) 138, 189, 204, 323, 357
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 1 cut(s) 216
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 74, 130
MalI GATC 5 cut(s) 140, 191, 206, 325, 359
MboI GATC 5 cut(s) 138, 189, 204, 323, 357
MboII GAAGA 3 cut(s) 38, 121, 246
MflI RGATCY 2 cut(s) 323, 357
MluCI AATT 3 cut(s) 222, 338, 364
MlyI GAGTC 3 cut(s) 13, 71, 267
MnlI CCTC 6 cut(s) 18, 26, 47, 54, 135, 314
MseI TTAA 3 cut(s) 156, 333, 367
MspA1I CMGCKG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 29, 149
NdeII GATC 5 cut(s) 138, 189, 204, 323, 357
NmuCI GTSAC 2 cut(s) 74, 130
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 3 cut(s) 12, 71, 266
PpsI GAGTC 3 cut(s) 12, 71, 266
PsiI TTATAA 1 cut(s) 243
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 323, 357
PvuII CAGCTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 156, 333, 367
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 138, 189, 204, 323, 357
SchI GAGTC 3 cut(s) 13, 71, 267
SetI ASST 5 cut(s) 18, 58, 204, 255, 307
SfcI CTRYAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 3 cut(s) 222, 338, 364
SsiI CCGC 1 cut(s) 152
TaiI ACGT 1 cut(s) 255
TasI AATT 3 cut(s) 222, 338, 364
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 156, 333, 367
Tru9I TTAA 3 cut(s) 156, 333, 367
TseFI GTSAC 2 cut(s) 74, 130
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 74, 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmiI GTMKAC 2 cut(s) 63, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.