Rh2AG416700

Belongs to the cystatin family. Phytocystatin subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
61827115 .. 61827483
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG416700.1

Sequence Viewer

Length: 369 bp
ATGAGTCCTCACTACCTCGTTGCAATCCTTGCTCTCCTCTTTCCTCTTCTCACAGCTGCAGTAGACAAAAGTGGTGACTCTGCTCCACTCGGTGCTTGGACACCCTTGAAGAACATTAGCGACCCTCATGTCACAGAGATCGCAAAATATGCAGTTAACGTATACAACAGCCAAAATCATAAGAACTTGATCTTTCAGAACGTGATCAAGGGATATTACCAAATTGAATCAGGAAGTCTTTATAAACTTGACGTTAGAGTCAAGGATGAGAAGTCTGTTCTGGGGAACACAACCGATTACCAAGCTATTGTCTTGTCAAAAGGATCTGTCTTTAAAAAATTGGTCTCCTTTTATCAGATCTCAAATTAA

Protein Analysis

122

Amino Acids

13.54

Weight (kDa)

9.07

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cystatin PF00031 35 - 106 2.8e-08 Cystatin domain
SQAPI PF16845 37 - 119 5.4e-22 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019374)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0140821
rosa_multiflora Rmu_sc0003342.1_g000040
rosa_rugosa Rorug02G0365400
rosa_samantha Rh2AG416700 Rh2BG426300 Rh2CG402900 Rh2DG436200
rosa_wichuraiana Rw2G034090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AasI GACNNNNNNGTC 2 cut(s) 128, 257
AccI GTMKAC 2 cut(s) 63, 162
AclWI GGATC 1 cut(s) 331
AdeI CACNNNGTG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 109, 227
AluBI AGCT 2 cut(s) 56, 305
AluI AGCT 2 cut(s) 56, 305
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 86
BbvI GCAGC 1 cut(s) 43
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 349
BfmI CTRYAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 357
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 349
BseGI GGATG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 349
Bsp143I GATC 5 cut(s) 138, 189, 204, 323, 357
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 349
BssMI GATC 5 cut(s) 138, 189, 204, 323, 357
BssNAI GTATAC 1 cut(s) 163
Bst1107I GTATAC 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 2 cut(s) 29, 149
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 5 cut(s) 141, 192, 207, 326, 360
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 5 cut(s) 138, 189, 204, 323, 357
BstMWI GCNNNNNNNGC 2 cut(s) 29, 149
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 323, 357
BstYI RGATCY 2 cut(s) 323, 357
BstZ17I GTATAC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 271
CviAII CATG 1 cut(s) 128
CviJI RGCY 3 cut(s) 56, 171, 305
CviKI_1 RGCY 3 cut(s) 56, 171, 305
DpnI GATC 5 cut(s) 140, 191, 206, 325, 359
DpnII GATC 5 cut(s) 138, 189, 204, 323, 357
DraI TTTAAA 1 cut(s) 334
DraIII CACNNNGTG 1 cut(s) 92
DrdI GACNNNNNNGTC 2 cut(s) 128, 257
DseDI GACNNNNNNGTC 2 cut(s) 128, 257
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 349
FaeI CATG 1 cut(s) 131
FaiI YATR 5 cut(s) 129, 150, 163, 180, 243
FatI CATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 2 cut(s) 63, 162
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 131
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 4, 77, 227, 258
HpaI GTTAAC 1 cut(s) 157
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 64, 157, 163
Hpy188I TCNGA 2 cut(s) 198, 357
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 3 cut(s) 64, 157, 163
HpyCH4IV ACGT 3 cut(s) 159, 201, 252
HpyCH4V TGCA 3 cut(s) 23, 59, 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 149
HpySE526I ACGT 3 cut(s) 159, 201, 252
Hsp92II CATG 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 5 cut(s) 138, 189, 204, 323, 357
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 216, 266
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 3 cut(s) 159, 201, 252
MaeIII GTNAC 2 cut(s) 74, 130
MalI GATC 5 cut(s) 140, 191, 206, 325, 359
MboI GATC 5 cut(s) 138, 189, 204, 323, 357
MboII GAAGA 2 cut(s) 38, 121
MflI RGATCY 2 cut(s) 323, 357
MluCI AATT 3 cut(s) 222, 338, 364
MlyI GAGTC 3 cut(s) 13, 71, 267
MnlI CCTC 5 cut(s) 18, 26, 47, 54, 135
MseI TTAA 3 cut(s) 156, 333, 367
MspA1I CMGCKG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 29, 149
NdeII GATC 5 cut(s) 138, 189, 204, 323, 357
NlaIII CATG 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 74, 130
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 3 cut(s) 12, 71, 266
PpsI GAGTC 3 cut(s) 12, 71, 266
PsiI TTATAA 1 cut(s) 243
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 323, 357
PvuII CAGCTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 156, 333, 367
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 138, 189, 204, 323, 357
SchI GAGTC 3 cut(s) 13, 71, 267
SetI ASST 6 cut(s) 18, 58, 162, 204, 255, 307
SfcI CTRYAG 1 cut(s) 57
Sse9I AATT 3 cut(s) 222, 338, 364
TaiI ACGT 3 cut(s) 162, 204, 255
TasI AATT 3 cut(s) 222, 338, 364
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 156, 333, 367
Tru9I TTAA 3 cut(s) 156, 333, 367
TseFI GTSAC 2 cut(s) 74, 130
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 74, 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmiI GTMKAC 2 cut(s) 63, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.