Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003342.1

Orthogroup ID

OG0022954

Physical Location & Seq

Genomic Coordinates Reverse (-)

169529 .. 169903

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgatgcgtgctcattacttcctcgcactcctcaccttccttaatccactcttcgccgcaggcgcttctgctccgactgttgagtggaagcctgtagacctccgcgacccgcttgtgacagatatcggaaagtttgcagttatcgaatacaaccagcgatataagacggacttgttctttcggaaggtgactaaaggcacctacaaggatgaatattattcgccgtattcgaatgccaccttgtatcagcttgtccttattgttgatgctgactcaagtcctgaccccaaacttgcagtttatcagactactgtcttccgtaggcagtgggatcacttgctgaaattgcgcacctttgttaagatttcaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

124

Amino Acids

14.46

Weight (kDa)

9.42

Isoelectric Point (pI)

25.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	33 - 121	1e-11	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022954)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019899
rosa_multiflora	Rmu_sc0003342.1_g000043
rosa_roxburghii	Rroxscaffold_2G00104460
rosa_rugosa	Rorug02G0365500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	57, 103, 110
AclWI	GGATC	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	369
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	65, 351
AsuHPI	GGTGA	2 cut(s)	25, 199
AsuII	TTCGAA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	208
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	256
BoxI	GACNNNNGTC	2 cut(s)	276, 311
BpiI	GAAGAC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	3 cut(s)	57, 103, 110
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	197
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	79, 313
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	9, 61
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 351
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 346
BstPAI	GACNNNNGTC	2 cut(s)	276, 311
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	9, 61
CfoI	GCGC	2 cut(s)	65, 351
CviJI	RGCY	2 cut(s)	91, 250
CviKI_1	RGCY	2 cut(s)	91, 250
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	124
FaiI	YATR	1 cut(s)	162
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	57
FspI	TGCGCA	1 cut(s)	350
GlaI	GCGC	2 cut(s)	64, 350
GluI	GCNGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	66
HhaI	GCGC	2 cut(s)	65, 351
Hin6I	GCGC	2 cut(s)	63, 349
HinP1I	GCGC	2 cut(s)	63, 349
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	2 cut(s)	25, 199
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	75, 128, 183, 306
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	46, 178
HpyCH4III	ACNGT	2 cut(s)	79, 313
HpyCH4V	TGCA	2 cut(s)	137, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 346
HspAI	GCGC	2 cut(s)	63, 349
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	45, 105, 167, 294
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	115, 187
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	43, 307
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	32, 41, 110
MseI	TTAA	2 cut(s)	42, 360
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	62, 346
NdeII	GATC	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	115, 187
NsbI	TGCGCA	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PshAI	GACNNNNGTC	2 cut(s)	276, 311
PspN4I	GGNNCC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	42, 360
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	7 cut(s)	38, 102, 189, 203, 242, 252, 356
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	3 cut(s)	57, 103, 110
SspI	AATATT	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	79, 313
TaqI	TCGA	2 cut(s)	144, 230
TasI	AATT	1 cut(s)	344
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	42, 360
Tru9I	TTAA	2 cut(s)	42, 360
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	115, 187
Tsp45I	GTSAC	2 cut(s)	115, 187
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	182, 308
TspRI	CASTG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.